DecodeGenetics / graphtyperLinks
Population-scale genotyping using pangenome graphs
☆193Updated 9 months ago
Alternatives and similar repositories for graphtyper
Users that are interested in graphtyper are comparing it to the libraries listed below
Sorting:
- VCF-kit: Assorted utilities for the variant call format☆130Updated 3 months ago
- Bayesian genotyper for structural variants☆135Updated 4 years ago
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- Jasmine: SV Merging Across Samples☆228Updated 10 months ago
- Structural variation and indel detection by local assembly☆248Updated last month
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆172Updated last year
- Scalable gVCF merging and joint variant calling for population sequencing projects☆171Updated last year
- software tools for haplotype assembly from sequence data☆223Updated 8 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- Graph realignment tools for structural variants☆163Updated 2 years ago
- NEAT read simulation tools☆101Updated 3 years ago
- Hierarchical Alignment Format☆172Updated last month
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆160Updated 2 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- Tools for plotting methylation data in various ways☆162Updated 2 weeks ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆109Updated 2 years ago
- ☆123Updated 2 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆245Updated 3 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆258Updated last year
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆124Updated last year
- SV detection from paired end reads mapping☆117Updated 6 years ago
- Long read production pipelines☆150Updated this week
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- Annotation and Ranking of Structural Variation☆263Updated 3 weeks ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- A tool set for short variant discovery in genetic sequence data.☆202Updated 4 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆146Updated 3 months ago
- A structural variation pipeline for short-read sequencing☆193Updated last week