zeeev / mergeSVcallers
heuristics to merge structural variant calls in VCF format.
☆36Updated 8 years ago
Alternatives and similar repositories for mergeSVcallers:
Users that are interested in mergeSVcallers are comparing it to the libraries listed below
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆30Updated 3 years ago
- ☆39Updated 11 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆39Updated 7 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- ☆22Updated 3 years ago
- for detecting internal tandem duplication from genome sequence data.☆11Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Structural variant caller☆54Updated 3 years ago
- ☆35Updated 4 years ago
- Linked-Read Alignment Tool☆27Updated 5 years ago
- Variant annotation and merging pipeline☆33Updated 3 weeks ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Structural variant merging tool☆49Updated 7 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆79Updated last month
- Computes various SV statistics☆14Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆36Updated 9 months ago
- CNV screening and annotation tool☆25Updated 8 years ago
- Structural Variant Index☆72Updated 4 months ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆32Updated last month
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago