zeeev / mergeSVcallers
heuristics to merge structural variant calls in VCF format.
☆35Updated 7 years ago
Related projects: ⓘ
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆44Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Pipeline for structural variation detection in cohorts☆45Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- ☆38Updated last week
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆27Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- ☆22Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆45Updated 4 years ago
- ☆79Updated 4 months ago
- ☆34Updated 3 years ago
- Structural variant merging tool☆44Updated 3 weeks ago
- Structural variant caller☆53Updated 2 years ago
- Structural Variant Index☆66Updated 5 months ago
- ☆29Updated 3 years ago
- for detecting internal tandem duplication from genome sequence data.☆11Updated 5 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 5 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 3 years ago
- UCSC Nanopore☆42Updated 5 years ago
- ☆45Updated 2 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 3 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 8 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- Population-wide Deletion Calling☆34Updated 2 weeks ago
- Linked-Read Alignment Tool☆28Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated last year
- ☆17Updated this week