yal054 / snATACutils
☆24Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for snATACutils
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- Functional Inference of Gene Regulation☆36Updated 4 months ago
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆43Updated 8 months ago
- scWGCNA☆54Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆43Updated 4 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆46Updated this week
- ☆31Updated 5 years ago
- Single cell RNA-seq analysis bundle☆33Updated 5 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆68Updated 2 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- SCDC☆42Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆46Updated last year
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆22Updated last week
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated 3 weeks ago
- Functions for single cell data analysis☆26Updated 3 years ago
- Clone identification from single-cell data☆59Updated 2 years ago
- ☆30Updated 6 months ago
- ☆18Updated 8 months ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆32Updated 2 months ago
- R package for pathway analysis in scRNA-seq data☆62Updated 2 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆75Updated 2 years ago
- SNV calling from single cell sequencing☆83Updated this week
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- Single Cell Analysis of Five'Ends☆44Updated 7 months ago
- Inferring CNV data from single cell ATAC seq☆22Updated 9 months ago
- ☆37Updated 3 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆31Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆13Updated last year