Alternatives and similar repositories for snATACutils

Users that are interested in snATACutils are comparing it to the libraries listed below

• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆51Updated 2 years ago
• colomemaria / epiAneufinder
  R package to detect breakpoints and assign somies to scATAC-seq data
  ☆40Updated last week
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆35Updated 5 years ago
• UPSUTER / GEMLI
  ☆32Updated 7 months ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 5 years ago
• wenweixiong / MARVEL
  ☆51Updated last year
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• swaruplabUCI / ArchRtoSignac
  An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
  ☆37Updated last year
• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆50Updated last year
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆88Updated last month
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆73Updated 3 weeks ago
• mahmoudibrahim / genesorteR
  Feature Ranking in (possibly large) Clustered Single Cell Data
  ☆40Updated 4 years ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆77Updated 4 months ago
• lhe17 / nebula
  ☆41Updated 2 months ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 10 months ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆79Updated 3 years ago
• JunyueC / sci-RNA-seq3_pipeline
  Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)
  ☆43Updated 4 years ago
• gxiaolab / scAllele
  ☆38Updated last year
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆57Updated 3 years ago
• BMILAB / scAPAtrap
  ☆23Updated last year
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 4 months ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 5 years ago
• nghiavtr / SCmut
  ☆33Updated 6 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆36Updated 4 years ago
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆51Updated last year
• cole-trapnell-lab / cicero-release
  ☆59Updated 11 months ago
• meichendong / SCDC
  SCDC
  ☆45Updated 2 months ago
• beyondpie / CEMBA_wmb_snATAC
  Whole mouse brain snATAC seq analysis
  ☆27Updated 4 months ago