ren-lab / snp-selex
☆17Updated 3 years ago
Alternatives and similar repositories for snp-selex:
Users that are interested in snp-selex are comparing it to the libraries listed below
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆12Updated 11 months ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆35Updated this week
- Summary statistics for repertoires☆16Updated 2 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Updated 2 years ago
- ☆26Updated last year
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆10Updated 5 months ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 4 months ago
- Mean Alterations Using Discrete Expression☆14Updated 11 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 2 weeks ago
- scGRO-seq analyses codes☆12Updated last year
- A GenePattern module for running the ssGSEA method☆13Updated 3 weeks ago
- Trans-association between HLA and TCR-CDR3☆17Updated 2 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆29Updated last week
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆11Updated 2 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 7 months ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆13Updated last year
- A collection of perl scripts for NGS analysis☆15Updated 5 months ago
- WES HLA Typing based on multiple alternative tools☆15Updated 4 years ago
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)☆10Updated 3 years ago
- ☆11Updated last year
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆16Updated 10 months ago
- Gene Ontology Gene Sets from BioMart☆11Updated last year
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆13Updated 4 months ago
- Code for EpiMap data browser☆14Updated 9 months ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 2 years ago
- ☆12Updated 3 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆13Updated 2 years ago