guokai8 / scGSVAView external linksLinks
scGSVA: Perform GSVA for single cell RNA seq
☆70Jan 31, 2026Updated last week
Alternatives and similar repositories for scGSVA
Users that are interested in scGSVA are comparing it to the libraries listed below
Sorting:
- Function Enrichment analysis and Network construction☆12Dec 10, 2025Updated 2 months ago
- An R package for visualising cell-cell interactions☆46Aug 14, 2024Updated last year
- Methods for detecting doublets in single-cell sequencing data☆230Dec 15, 2025Updated last month
- Assessing the purity of single cell population☆141Jun 3, 2022Updated 3 years ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆222May 29, 2025Updated 8 months ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆50Nov 1, 2025Updated 3 months ago
- Build Annotation package by using information from KEGG, NCBI, Ensembl☆15May 4, 2023Updated 2 years ago
- The integration of single cell rank-based gene set enrichment analysis☆145Jan 14, 2026Updated 3 weeks ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆288Jan 29, 2026Updated 2 weeks ago
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 2 years ago
- Quantifying metabolism activity at the single-cell resolution☆151Jun 27, 2025Updated 7 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆140Dec 25, 2021Updated 4 years ago
- Scissor package☆250May 10, 2024Updated last year
- High dimensional weighted gene co-expression network analysis☆465Jan 7, 2026Updated last month
- R package for semi-supervised single-cell data integration☆95Jan 27, 2026Updated 2 weeks ago
- Easy single cell analysis platform for enrichment☆211Jan 4, 2026Updated last month
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆623Nov 28, 2025Updated 2 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆180Aug 12, 2025Updated 6 months ago
- Spatial omics analysis toolbox☆360Updated this week
- Gene set variation analysis☆231Dec 14, 2025Updated last month
- reticulate-free single cell format conversion☆208Jan 23, 2026Updated 3 weeks ago
- Useful functions to make your scRNA-seq plot more cool!☆374Dec 24, 2025Updated last month
- Multi-sample multi-group scRNA-seq analysis tools☆217Dec 18, 2025Updated last month
- LIANA: a LIgand-receptor ANalysis frAmework☆231Aug 7, 2024Updated last year
- ☆129Feb 11, 2024Updated 2 years ago
- Methods for decontamination of single cell data☆56Feb 16, 2025Updated 11 months ago
- ☆76Aug 21, 2023Updated 2 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Aug 16, 2021Updated 4 years ago
- ☆29Jul 25, 2024Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Nov 30, 2023Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆83May 30, 2024Updated last year
- Hotspot cluster distance analysis in spatial transcriptomic data☆35Feb 10, 2025Updated last year
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆407Aug 22, 2025Updated 5 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆138Jul 23, 2025Updated 6 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆237May 8, 2023Updated 2 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- simpler single cell RNAseq data Visualization☆10Feb 28, 2025Updated 11 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆87Dec 15, 2022Updated 3 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…☆44Nov 25, 2024Updated last year