guokai8 / scGSVA
scGSVA: Perform GSVA for single cell RNA seq
☆55Updated 5 months ago
Alternatives and similar repositories for scGSVA:
Users that are interested in scGSVA are comparing it to the libraries listed below
- Inference of cell-cell communication from single-cell RNAseq data☆47Updated last year
- ☆61Updated 9 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 5 months ago
- A R package for advanced single cell data viz☆66Updated last year
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- ☆59Updated 5 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 9 months ago
- Code repository for single cell RNA-seq☆34Updated 4 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- ☆21Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆25Updated 3 weeks ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆27Updated 4 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆35Updated 4 years ago
- Repository for codes for the HBCA paper☆35Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- ☆46Updated 5 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated this week
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 7 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 4 months ago
- scWGCNA☆58Updated 2 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- ☆40Updated 4 years ago
- Functions for single cell data analysis☆31Updated 3 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆61Updated 3 years ago
- simpler single cell RNAseq data clustering☆40Updated last month
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago