Papatheodorou-Group / BENGALLinks
Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
☆41Updated 3 months ago
Alternatives and similar repositories for BENGAL
Users that are interested in BENGAL are comparing it to the libraries listed below
Sorting:
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆65Updated 3 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 9 months ago
- Benchmark of GRNs using the GRETA pipeline☆28Updated this week
- Functional Inference of Gene Regulation☆48Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated 2 weeks ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- ☆38Updated 4 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Whole mouse brain snATAC seq analysis☆27Updated 6 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 months ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 4 years ago
- scWGCNA☆61Updated 2 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Single cell omics biology annotations☆51Updated 6 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆76Updated last month
- Non-parametric density inference for single-cell analysis.☆72Updated 5 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- ☆36Updated last year
- ☆59Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆41Updated last year
- R implementation of GeneTrajectory☆65Updated last year
- Parse ArchR arrow files to anndata h5ad☆15Updated last year
- inferring regulatory cellular dynamics☆58Updated last month
- Gene group activity utility functions for Scanpy☆93Updated 10 months ago
- ☆54Updated 11 months ago
- ☆46Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago