Papatheodorou-Group / BENGAL
Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
☆36Updated 10 months ago
Alternatives and similar repositories for BENGAL:
Users that are interested in BENGAL are comparing it to the libraries listed below
- R implementation of GeneTrajectory☆52Updated 10 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆59Updated last month
- Functional Inference of Gene Regulation☆40Updated 7 months ago
- ☆24Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 9 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆57Updated 2 years ago
- Molecular interactions inference from single-cell multi-omics data☆22Updated 3 months ago
- Whole mouse brain snATAC seq analysis☆24Updated 4 months ago
- The scripts used for the analyses in TOME project☆23Updated 2 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Single cell omics biology annotations☆49Updated 3 weeks ago
- ☆34Updated 4 months ago
- Predict RNA velocity through deep learning☆66Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated last month
- ☆36Updated 5 months ago
- ☆44Updated 9 months ago
- ☆29Updated 3 weeks ago
- Using TCR and expression for sequence embedding☆51Updated 2 weeks ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 5 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆68Updated 3 weeks ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated last year
- ☆49Updated 5 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆39Updated last year
- scWGCNA☆56Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 5 months ago
- ☆50Updated 3 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆59Updated last month
- Gene group activity utility functions for Scanpy☆67Updated 2 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆19Updated last week
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago