weng-lab / ENCODE-cCREsLinks
Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements
☆25Updated 6 months ago
Alternatives and similar repositories for ENCODE-cCREs
Users that are interested in ENCODE-cCREs are comparing it to the libraries listed below
Sorting:
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 3 years ago
- Tutorial Website☆59Updated 4 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated 11 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆21Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 6 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Links to ATAC-seq analysis tools☆68Updated 3 years ago
- ☆17Updated 6 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆50Updated 11 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆28Updated 7 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 4 months ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆28Updated 3 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆49Updated 11 months ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- ATAC-seq Quality Control☆24Updated 2 months ago
- Enhanced version of the FastQTL QTL mapper☆67Updated 2 years ago