yal054 / epiformerLinks
☆26Updated 9 months ago
Alternatives and similar repositories for epiformer
Users that are interested in epiformer are comparing it to the libraries listed below
Sorting:
- ☆37Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- Parse ArchR arrow files to anndata h5ad☆16Updated 2 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆40Updated 2 years ago
- ☆69Updated 2 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- Code for reproducing the Sei manuscript results☆17Updated 4 years ago
- A method for analyzing scATAC-seq experiments.☆34Updated 7 months ago
- High-definition modeling of chromatin + transcriptomics data☆26Updated last week
- Benchmark of GRNs using the GRETA pipeline☆31Updated this week
- Pipeline to run scE2G☆32Updated 3 months ago
- A python package for chromVAR☆33Updated 2 years ago
- cell type specific, trait-associated gene regulation☆29Updated 10 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Toolkit for single-cell DNA methylation analysis.☆46Updated 2 weeks ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- ☆33Updated 3 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Updated last year
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Updated last month
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆15Updated 2 years ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆42Updated 6 months ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated 3 weeks ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆19Updated 4 years ago
- Mapping the Functional Landscape of TCR Repertoire☆35Updated 4 years ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆57Updated last week
- ☆53Updated last year
- ☆12Updated 2 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆91Updated 3 months ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 3 months ago