yal054 / epiformerLinks
☆26Updated 4 months ago
Alternatives and similar repositories for epiformer
Users that are interested in epiformer are comparing it to the libraries listed below
Sorting:
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated this week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 8 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- ☆68Updated 3 months ago
- ☆12Updated 2 years ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆18Updated 3 years ago
- A method for analyzing scATAC-seq experiments.☆34Updated 2 months ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- Benchmark of GRNs using the GRETA pipeline☆28Updated this week
- A python package for chromVAR☆30Updated 2 years ago
- ☆35Updated last year
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆39Updated last month
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆37Updated 2 years ago
- Whole mouse brain snATAC seq analysis☆27Updated 4 months ago
- Parse ArchR arrow files to anndata h5ad☆14Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆21Updated last year
- cell type specific, trait-associated gene regulation☆27Updated 5 months ago
- Toolkit for single-cell DNA methylation analysis.☆42Updated this week
- ☆17Updated last year
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 5 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆20Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- TF analysis from epigenetic and Hi-C data☆18Updated 5 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 4 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆74Updated last month
- ☆51Updated last year
- ☆35Updated 2 years ago
- ☆24Updated last year