GreenleafLab / chromVARmotifsLinks
R package with motifs for use with chromVAR
☆28Updated 7 years ago
Alternatives and similar repositories for chromVARmotifs
Users that are interested in chromVARmotifs are comparing it to the libraries listed below
Sorting:
- Fast motif matching in R☆46Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated last year
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- R/Bioconductor package for working with 10x scATACseq data☆42Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- ☆34Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- ☆47Updated 9 months ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆34Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- binned motif enrichment analysis and visualisation☆42Updated last month
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 6 months ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- ☆12Updated 6 years ago