☆15Mar 29, 2024Updated 2 years ago
Alternatives and similar repositories for whole_mouse_brain_MERFISH_atlas_scripts_2023
Users that are interested in whole_mouse_brain_MERFISH_atlas_scripts_2023 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Codes for generating stlearn figures☆11May 22, 2023Updated 3 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Aug 9, 2019Updated 7 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆19Feb 6, 2026Updated 9 months ago
- ☆10Dec 18, 2025Updated 10 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 5 years ago
- ☆24Jan 6, 2024Updated 2 years ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 4 years ago
- ☆57Sep 2, 2026Updated 2 months ago
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆15Mar 10, 2023Updated 3 years ago
- ☆21Dec 15, 2023Updated 2 years ago
- A Python utility for faithful and interpretable visualisations of zero-inflated distributions☆24Oct 11, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reconstruct the three-dimensional structure of extrachromosomal DNA☆14Sep 2, 2026Updated 2 months ago
- ☆10Oct 7, 2024Updated 2 years ago
- ☆16Apr 9, 2021Updated 5 years ago
- ☆14Nov 3, 2023Updated 3 years ago
- ☆44Jan 12, 2026Updated 9 months ago
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 3 years ago
- ☆14Jun 6, 2024Updated 2 years ago
- ☆10Aug 18, 2024Updated 2 years ago
- pipeline and scripts for the analysis of scATAC-seq data via DBIT-seq☆14Mar 3, 2026Updated 8 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- Data analysis for the moscot-framework project☆27Feb 27, 2026Updated 8 months ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆53Aug 1, 2021Updated 5 years ago
- Reproducibility notebooks for scPoli☆25May 5, 2023Updated 3 years ago
- STAIG: Spatial Transcriptomics Analysis via Image-Aided Graph Contrastive Learning for Deciphering and Alignment-Free Integration☆22Updated this week
- Scripts and notebooks used in Akgol Oksuz et al. paper☆12Jan 18, 2021Updated 5 years ago
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated 2 years ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆38Sep 21, 2021Updated 5 years ago
- Contains notebooks that analyse scsHi-C data and create the scsHi-C paper figures.☆10Nov 30, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Aug 15, 2025Updated last year
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- ☆14Mar 28, 2025Updated last year
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆15Jul 29, 2025Updated last year
- Reproduce results from Universal Cell Embedding paper☆11May 12, 2026Updated 5 months ago
- Single-cell Hi-C & RNA analysis☆11Nov 20, 2024Updated last year
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆15Dec 27, 2023Updated 2 years ago