r3fang / SnapToolsLinks
A module for working with snap files in Python
☆36Updated 5 years ago
Alternatives and similar repositories for SnapTools
Users that are interested in SnapTools are comparing it to the libraries listed below
Sorting:
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated this week
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- ☆54Updated this week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated 2 years ago
- Functional Inference of Gene Regulation☆45Updated 11 months ago
- ☆35Updated 9 months ago
- ☆63Updated 4 years ago
- Analysis of cell-cell communication at single-cell resolution☆102Updated 9 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated last year
- Create cisTarget databases☆52Updated last week
- ☆59Updated 9 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆62Updated 3 years ago
- Single-Cell Clustering Assessment Framework☆102Updated last year
- ☆30Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 2 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆88Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆82Updated last month
- pseudobulking on an AnnData object☆32Updated 3 months ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- ☆55Updated 7 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆81Updated 9 months ago
- ☆52Updated 9 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- Repository for Cibersortx☆60Updated 4 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆118Updated 10 months ago