A module for working with snap files in Python
☆37May 5, 2020Updated 5 years ago
Alternatives and similar repositories for SnapTools
Users that are interested in SnapTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 2 years ago
- ☆29Jul 25, 2024Updated last year
- Episcanpy: Epigenomics Single Cell Analysis in Python☆151Dec 5, 2024Updated last year
- Python package with CLI for the analysis of single cell methylation data.☆20Oct 29, 2024Updated last year
- Code for reproducing the Sei manuscript results☆17Jan 25, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆54Mar 4, 2025Updated last year
- GREAT algorithm in Python☆14Oct 24, 2022Updated 3 years ago
- epigenome analysis to rank transcription factors☆32Feb 2, 2023Updated 3 years ago
- scDissector is an exploratory data analysis tool for clustered single-cell RNA-seq data. The tool has been developed and implemented as R…☆19Jul 21, 2023Updated 2 years ago
- SCRAT: Single-Cell Regulome Analysis Tool☆15Apr 4, 2020Updated 6 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Apr 24, 2020Updated 5 years ago
- TCR Reconstruction Algorithm for Paired-End Single cell☆14Oct 13, 2019Updated 6 years ago
- Interactive software tool for the assignment of cell types in single-cell studies.☆33Apr 14, 2023Updated 2 years ago
- Utilities for large scale distributed single cell data processing☆24Jan 20, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Jun 30, 2023Updated 2 years ago
- Reproducible Snakemake workflow for benchmarking single-cell chromatin accessibility analysis methods, published in https://doi.org/10.11…☆17Jan 24, 2026Updated 2 months ago
- Predicting transcription factor binding in single cells through deep learning☆14Oct 14, 2022Updated 3 years ago
- ☆36Sep 25, 2022Updated 3 years ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Jul 5, 2022Updated 3 years ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- ☆19Dec 15, 2023Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Mar 16, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Sep 22, 2023Updated 2 years ago
- Whole mouse brain snATAC seq analysis☆29Apr 18, 2025Updated 11 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆68Jul 8, 2025Updated 9 months ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆20Nov 19, 2020Updated 5 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- ☆13Apr 5, 2024Updated 2 years ago
- Paired-seq☆15Jul 17, 2024Updated last year
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Mar 4, 2020Updated 6 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆446Feb 18, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Misc. utilities☆11May 21, 2019Updated 6 years ago
- Genetic multiplexing of barcoded single cell RNA-seq☆133Jul 1, 2024Updated last year
- A simple, intuitive and Efficient single cell binary Data Storage format☆15Oct 10, 2019Updated 6 years ago
- Tools for correcting single cell barcodes for various scATAC-seq techniques and creating fragment files and spltting BAM files per cluste…☆29Apr 1, 2026Updated last week
- Fast, sensitive and accurate integration of single-cell data with Harmony☆633Updated this week
- ☆15Sep 27, 2022Updated 3 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Jul 2, 2024Updated last year