Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"
☆14Apr 1, 2020Updated 6 years ago
Alternatives and similar repositories for mouse_brain_2020
Users that are interested in mouse_brain_2020 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆17Jul 19, 2021Updated 5 years ago
- ☆16May 12, 2026Updated 2 months ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆17Apr 9, 2021Updated 5 years ago
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- ☆23Sep 23, 2022Updated 3 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Oct 29, 2021Updated 4 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆57Mar 12, 2026Updated 4 months ago
- ☆19Feb 15, 2024Updated 2 years ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 5 years ago
- Computational biology utility scripts☆19Apr 16, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MVP (Qi et al 2021) source code☆17May 11, 2021Updated 5 years ago
- CellRank's reproducibility repository.☆17Jan 13, 2022Updated 4 years ago
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆17Oct 31, 2022Updated 3 years ago
- A project - tutorial. Differential expression of RNAseq raw counts data using a Real world dataset in R. Packages covered 'DESeq2' and 'E…☆14Nov 18, 2022Updated 3 years ago
- ☆31Aug 4, 2023Updated 2 years ago
- SCREW: A Reproducible Workflow for Single-Cell Epigenomics☆11Oct 22, 2017Updated 8 years ago
- ☆19Mar 11, 2024Updated 2 years ago
- Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022☆18Oct 20, 2022Updated 3 years ago
- ☆21Nov 15, 2020Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Code for the analyses in the human reference interactome paper.☆28Dec 8, 2022Updated 3 years ago
- ☆23Mar 29, 2023Updated 3 years ago
- Image classification using SVM, KNN, Bayes, Adaboost, Random Forest and CNN.Extracting features and reducting feature dimension using T-S…☆13Aug 12, 2020Updated 5 years ago
- ☆15May 31, 2020Updated 6 years ago
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆20Jun 7, 2023Updated 3 years ago
- This repository contains HCA Benchmarking codes☆27Nov 11, 2019Updated 6 years ago
- ☆28Apr 18, 2018Updated 8 years ago
- R package for the identification of functionally important subnetworks☆14May 6, 2024Updated 2 years ago
- Neural Network for Polygenic score analysis☆16Jan 25, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆30Jul 25, 2024Updated last year
- combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆49Mar 18, 2022Updated 4 years ago
- Python package to analyze DNA methylation data☆46Feb 17, 2026Updated 5 months ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆30Jul 26, 2015Updated 10 years ago
- ☆30Jul 15, 2021Updated 5 years ago
- scNMT-seq gastrulation☆42Feb 8, 2023Updated 3 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Apr 22, 2019Updated 7 years ago