lhqing / mouse_brain_2020Links
Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"
☆14Updated 5 years ago
Alternatives and similar repositories for mouse_brain_2020
Users that are interested in mouse_brain_2020 are comparing it to the libraries listed below
Sorting:
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated 2 weeks ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Fast motif matching in R☆46Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- scWGCNA☆61Updated 3 years ago
- Code related to scRNA analysis using the scAmpi workflow☆27Updated 6 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆23Updated last year
- ☆39Updated 4 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 5 years ago
- ☆19Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 3 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆16Updated 4 years ago
- ☆52Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- ☆39Updated 3 months ago
- ☆62Updated 4 years ago
- ☆30Updated 7 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last week
- BioTIP: Biological Tipping-Point Identification and Characterization☆23Updated last month
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 8 months ago
- ☆34Updated 6 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago