linnarsson-lab / chromographLinks
Camiel's scATAC-seq analysis pipeline
☆12Updated last year
Alternatives and similar repositories for chromograph
Users that are interested in chromograph are comparing it to the libraries listed below
Sorting:
- Supplementary files and notebooks to recreate figures.☆16Updated 2 months ago
- CAST package☆40Updated 7 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆14Updated last year
- Parse ArchR arrow files to anndata h5ad☆12Updated last year
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆28Updated last year
- ☆23Updated 2 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆12Updated 8 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆24Updated 7 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆18Updated 8 months ago
- ☆28Updated 3 months ago
- ☆28Updated 3 months ago
- ☆10Updated 2 years ago
- scTM: A package for topic modelling in transcriptomics data☆20Updated last year
- ☆22Updated 2 years ago
- R and MATLAB scripts for MAGICAL☆11Updated 11 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 3 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 4 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 3 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆21Updated 3 weeks ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated last month
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆13Updated last year
- Paired Insertion Counting for snATAC-seq data☆17Updated 3 weeks ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆13Updated 7 months ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆20Updated 3 years ago
- Spatial direct messaging detected by bivariate Moran☆26Updated last month
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated last month
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year