navinlabcode / ACT_paperLinks
Scripts used for the ACT paper
☆12Updated 4 years ago
Alternatives and similar repositories for ACT_paper
Users that are interested in ACT_paper are comparing it to the libraries listed below
Sorting:
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- ☆20Updated 5 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆23Updated last month
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆18Updated 4 years ago
- ☆27Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 10 months ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14Updated 6 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 6 years ago
- ☆18Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 2 months ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Updated 6 months ago
- ☆17Updated 7 years ago
- ☆19Updated 2 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated last month
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 5 years ago
- ☆30Updated 4 years ago
- ☆53Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Updated last week
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Updated last year
- GENome Organisation Visual Analytics☆15Updated 4 years ago
- ☆16Updated 3 months ago
- Analysis pipeline for CUT&TAG data☆21Updated 5 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 3 years ago