MangiolaLaboratory / HPCellLinks
Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R
☆16Updated last year
Alternatives and similar repositories for HPCell
Users that are interested in HPCell are comparing it to the libraries listed below
Sorting:
- Gene-level general linear mixed model☆24Updated 4 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 3 years ago
- Extension of SpatialExperiment with sf☆57Updated last month
- An R package for visualising cell-cell interactions☆46Updated last year
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Updated 2 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- An R package to plot interactive three-way differential expression analysis☆38Updated 3 weeks ago
- ☆27Updated 8 months ago
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆27Updated 3 months ago
- distinct: a method for differential analyses via hierarchical permutation tests☆11Updated 2 years ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆21Updated 2 years ago
- Single-cell analysis with non-negative matrix factorization☆48Updated 6 months ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆22Updated last year
- An R package for multi-dimensional pathway enrichment analysis☆17Updated last month
- Brings SingleCellExperiment objects to the tidyverse☆37Updated 3 months ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆18Updated 4 years ago
- Human brain, >200,000 nuclei☆23Updated 4 years ago
- Automatic selection of number of principal components☆17Updated 3 years ago
- BioCarta pathway images☆11Updated last week
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 5 years ago
- Trans-association between HLA and TCR-CDR3☆19Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 6 years ago
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Single Cell multimodal data scripts for downloading datasets☆18Updated 2 months ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated 2 years ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆32Updated 4 years ago
- Integrating zingeR with ZINB-WaVE weights☆26Updated 7 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 7 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago