junjunlab / ggSCvisLinks
Visualizing SingleCell data Using GGplot2
☆35Updated 11 months ago
Alternatives and similar repositories for ggSCvis
Users that are interested in ggSCvis are comparing it to the libraries listed below
Sorting:
- A R package for advanced single cell data viz☆68Updated this week
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆42Updated last year
- Enrichment Networks for Pathway Enrichment Analysis☆56Updated 2 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆64Updated 9 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆64Updated 4 years ago
- Methods for decontamination of single cell data☆47Updated 6 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆111Updated this week
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆80Updated 4 months ago
- Pan-Cancer Single Cell Classifier☆77Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 4 months ago
- ☆114Updated 5 months ago
- Code repository for single cell RNA-seq☆36Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆87Updated last month
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆79Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 3 weeks ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- ☆69Updated last year
- ☆70Updated 3 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆31Updated 4 months ago
- ☆62Updated 6 years ago
- ☆50Updated 5 years ago
- A ggplot extension for drawing smooth non-convex circles around a set of points.☆17Updated last year
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 4 months ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆19Updated this week
- ☆22Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆32Updated 9 months ago