junjunlab / ggSCvis

Related projects: ⓘ

• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆54Updated 10 months ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆44Updated last month
• xmc811 / Scillus
  R Package for Single-Cell Dataset Processing and Visualization
  ☆52Updated 3 years ago
• Zaoqu-Liu / BioEnricher
  Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer
  ☆68Updated 9 months ago
• junjunlab / tackPlotR
  An R package to visualize bigwigs.
  ☆29Updated 2 years ago
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆31Updated 3 years ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆30Updated 5 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆45Updated last year
• gatelabNW / csf_aging
  Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment
  ☆27Updated last year
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆45Updated last year
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆57Updated last month
• Moonerss / CIBERSORT
  ☆25Updated last month
• genecell / COSGR
  Accurate and fast cell marker gene identification with COSG
  ☆51Updated last year
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆16Updated last year
• FredHutch / Galeano-Nino-Bullman-Intratumoral-Microbiota_2022
  Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
  ☆33Updated 7 months ago
• Qile0317 / APackOfTheClones
  Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …
  ☆14Updated last week
• SiyuanHuang1 / cpplot
  Visualize the results of cell-cell communication analysis
  ☆19Updated last year
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆69Updated 3 years ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆35Updated last year
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆42Updated 2 years ago
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆47Updated last year
• JackieHanLab / SenCID
  Senescent Cell Identification
  ☆25Updated 6 months ago
• liulab-dfci / RIMA_pipeline
  ☆69Updated 8 months ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆64Updated 3 weeks ago
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆12Updated 8 months ago
• YuLab-SMU / ggsc
  🧠 Visualizing Single Cell and Spatial Transcriptomics
  ☆40Updated 2 weeks ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆32Updated 3 years ago
• YutingPKU / SingleCell-Multiomics
  ☆56Updated 2 years ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆62Updated 2 weeks ago
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆58Updated 3 months ago