4dn-dcic / pairsqc
QC report generator for Hi-C pairs file
☆11Updated 4 years ago
Alternatives and similar repositories for pairsqc:
Users that are interested in pairsqc are comparing it to the libraries listed below
- ☆20Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- R package to evaluate the reproducibility of Hi-C data☆26Updated last year
- HiC for copy Number variation and Translocation detection☆38Updated 3 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆41Updated 2 years ago
- A toolkit for analyzing architectural stripes☆19Updated 4 months ago
- chia pet analysis software☆25Updated 6 years ago
- Code for finding putative enhancers using Hi-C data☆27Updated 7 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- ☆16Updated 6 years ago
- ☆23Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- Published methods☆15Updated 8 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- ☆12Updated 4 years ago
- ☆21Updated last year
- ☆37Updated 5 years ago
- Chromatin States Map in mouse embryonic stem cell☆15Updated 7 years ago
- ☆21Updated last month
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆19Updated 8 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- ☆15Updated 8 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Long read to rMATS☆31Updated last year