4dn-dcic / pairsqcLinks
QC report generator for Hi-C pairs file
☆13Updated 5 years ago
Alternatives and similar repositories for pairsqc
Users that are interested in pairsqc are comparing it to the libraries listed below
Sorting:
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- ☆22Updated 5 years ago
- Long read to rMATS☆32Updated 2 years ago
- ☆29Updated 8 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…☆30Updated 5 years ago
- ☆38Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- chia pet analysis software☆25Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 4 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- ☆23Updated 4 years ago
- An Optimized Nested TAD caller for Hi-C data☆25Updated 4 years ago
- ☆34Updated last month
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- GENome Organisation Visual Analytics☆15Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Updated last year
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- A toolkit for analyzing architectural stripes☆20Updated last year
- ☆22Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Micro DNA identification☆24Updated 4 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆33Updated 3 months ago
- ☆37Updated 6 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆37Updated 10 years ago