4dn-dcic / pairsqc
QC report generator for Hi-C pairs file
☆10Updated 4 years ago
Alternatives and similar repositories for pairsqc:
Users that are interested in pairsqc are comparing it to the libraries listed below
- ☆20Updated 4 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆19Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 5 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆19Updated last year
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- An Optimized Nested TAD caller for Hi-C data☆20Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 10 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- ☆16Updated 4 years ago
- Peak calling for 4C data☆12Updated 6 years ago
- ☆23Updated 3 years ago
- chia pet analysis software☆25Updated 6 years ago
- R package to evaluate the reproducibility of Hi-C data☆26Updated last year
- ☆35Updated 5 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated 4 months ago
- Code for finding putative enhancers using Hi-C data☆27Updated 6 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 2 months ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- ☆21Updated 7 months ago
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆18Updated 8 years ago
- A toolkit for analyzing architectural stripes☆19Updated last month
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- ☆21Updated last year
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- ☆21Updated last month
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated 7 months ago