linnarsson-lab / adult-human-brainLinks
Cytograph version used for adult human-brain analysis
☆87Updated 2 months ago
Alternatives and similar repositories for adult-human-brain
Users that are interested in adult-human-brain are comparing it to the libraries listed below
Sorting:
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆65Updated this week
- ☆48Updated 7 years ago
- ☆35Updated last year
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- iterative clustering pipeline of big single cell datasets.☆33Updated last week
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆50Updated 10 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆77Updated 4 months ago
- ☆49Updated 2 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆68Updated 4 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆78Updated 3 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated this week
- ☆40Updated 2 years ago
- ☆45Updated 2 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 3 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- ☆56Updated last year
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated 6 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago
- ☆53Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆43Updated 3 weeks ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- ☆61Updated 2 years ago
- ☆55Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 3 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated this week
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Latent Embedding Multivariate Regression☆94Updated 9 months ago
- scPred package for cell type prediction from scRNA-seq data☆92Updated last year
- Unified access to several second-generation deconvolution methods☆73Updated 3 weeks ago
- R implementation of GeneTrajectory☆63Updated last year