single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
☆23Sep 12, 2023Updated 3 years ago
Alternatives and similar repositories for Fast-Higashi
Users that are interested in Fast-Higashi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆97Oct 29, 2025Updated 10 months ago
- Mapping pipeline for snmC-seq based technologies.☆20Sep 25, 2023Updated 2 years ago
- ☆73Nov 21, 2025Updated 10 months ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Jul 6, 2023Updated 3 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Apr 8, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆79Jun 24, 2026Updated 2 months ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Jun 27, 2025Updated last year
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆18Feb 6, 2026Updated 7 months ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆30Mar 15, 2024Updated 2 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆16Oct 6, 2025Updated 11 months ago
- PHi-C: deciphering Hi-C data into polymer dynamics☆11Aug 12, 2020Updated 6 years ago
- ☆30Jul 25, 2024Updated 2 years ago
- A toolkit for analyzing architectural stripes☆23Dec 1, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.☆18Oct 10, 2023Updated 2 years ago
- Scripts for HiRES analysis☆14Jul 26, 2024Updated 2 years ago
- Source codes and example scripts for chromatin tracing projects in Zhuang lab☆29Jan 27, 2022Updated 4 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 8 months ago
- Notes on single-cell Hi-C technologies, tools, and data☆89Jun 29, 2026Updated 2 months ago
- R package to evaluate the reproducibility of Hi-C data☆28Jun 23, 2023Updated 3 years ago
- Single-cell Hi-C data analysis toolbox☆28Aug 13, 2021Updated 5 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆44Jan 31, 2024Updated 2 years ago
- Code and data sharing of Liu et al. 2023 manuscript☆18Apr 18, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 5 years ago
- a computational tool for analyzing single cell Hi-C data☆27Apr 23, 2024Updated 2 years ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- ☆27Apr 15, 2025Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 4 years ago
- Analysis of Paired-Tag datasets☆44Jan 19, 2024Updated 2 years ago
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆15Sep 15, 2025Updated last year
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- Scripts + resources for analyzing combinatorial Hi-C data☆32Nov 5, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆37Apr 1, 2025Updated last year
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 4 months ago
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- Blazing fast toolkit to work with .hic and .cool files☆48Updated this week
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆16Nov 21, 2023Updated 2 years ago
- ☆14May 12, 2023Updated 3 years ago
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 5 years ago