ma-compbio / Fast-HigashiLinks
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
☆20Updated 2 years ago
Alternatives and similar repositories for Fast-Higashi
Users that are interested in Fast-Higashi are comparing it to the libraries listed below
Sorting:
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Updated last year
- ☆13Updated 4 years ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 4 months ago
- cell type specific, trait-associated gene regulation☆29Updated 10 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated 2 years ago
- ☆40Updated 5 months ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- ☆54Updated last year
- ☆19Updated 2 years ago
- Paired Insertion Counting for snATAC-seq data☆19Updated 8 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Mapping pipeline for snmC-seq based technologies.☆20Updated 2 years ago
- ☆19Updated 2 years ago
- scGRO-seq analyses codes☆13Updated 2 years ago
- ☆20Updated 5 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆34Updated 10 months ago
- ☆20Updated 2 years ago
- A toolkit for analyzing architectural stripes☆20Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 4 months ago
- ☆19Updated 2 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆18Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆15Updated 9 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated 2 months ago
- Toolkit for single-cell DNA methylation analysis.☆46Updated 3 weeks ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago