ma-compbio / Fast-Higashi
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
☆19Updated last year
Alternatives and similar repositories for Fast-Higashi:
Users that are interested in Fast-Higashi are comparing it to the libraries listed below
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆36Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆20Updated 10 months ago
- ☆45Updated 6 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- cell type specific, trait-associated gene regulation☆19Updated this week
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆31Updated 2 years ago
- A toolkit for analyzing architectural stripes☆19Updated 2 months ago
- ☆10Updated 3 years ago
- ☆31Updated 9 months ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 6 months ago
- ☆16Updated last year
- Information-based dimensionality reduction☆29Updated 2 months ago
- ☆18Updated last year
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆24Updated 9 months ago
- scGRO-seq analyses codes☆11Updated last year
- Mapping pipeline for snmC-seq based technologies.☆17Updated last year
- Landscape Single Cell Entropy☆19Updated 4 years ago
- ☆16Updated 8 months ago
- TF analysis from epigenetic and Hi-C data☆17Updated 2 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated 2 years ago
- Single-cell Hi-C data analysis toolbox☆25Updated 3 years ago
- ☆15Updated last year
- ☆18Updated 4 years ago
- ☆20Updated last year
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆14Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆18Updated 7 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- Analyzing chromatin accessibility data in R☆18Updated last year