ma-compbio / Fast-Higashi
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
☆17Updated last year
Related projects ⓘ
Alternatives and complementary repositories for Fast-Higashi
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆35Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 11 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- ☆40Updated 3 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆18Updated 7 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated last year
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆29Updated last year
- ☆30Updated 6 months ago
- Paired Insertion Counting for snATAC-seq data☆16Updated 3 months ago
- ☆17Updated last month
- ☆12Updated last year
- ☆18Updated last year
- ☆27Updated 3 months ago
- Mapping pipeline for snmC-seq based technologies.☆16Updated last year
- ☆29Updated 2 years ago
- ☆57Updated last month
- A toolkit for analyzing architectural stripes☆19Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- ☆11Updated last year
- ☆10Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆24Updated 6 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- TF analysis from epigenetic and Hi-C data☆17Updated last week
- ☆20Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆18Updated 4 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆21Updated 2 months ago
- Information-based dimensionality reduction☆29Updated 3 months ago
- Analyzing chromatin accessibility data in R☆18Updated last year