Alternatives and similar repositories for Fast-Higashi:

Users that are interested in Fast-Higashi are comparing it to the libraries listed below

• ma-compbio / scGHOST
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
  ☆20Updated last year
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• lhqing / cemba_data
  Mapping pipeline for snmC-seq based technologies.
  ☆20Updated last year
• HuMingLab / SnapHiC
  SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data
  ☆41Updated last year
• wenweixiong / MARVEL
  ☆49Updated 9 months ago
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆26Updated 2 years ago
• Xieeeee / Droplet-Hi-C
  🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript
  ☆12Updated 2 weeks ago
• 10XGenomics / cellranger-atac
  ☆18Updated 4 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆24Updated last month
• wangjuan001 / hicplus
  ☆10Updated 3 years ago
• Zhen-Miao / PICsnATAC
  Paired Insertion Counting for snATAC-seq data
  ☆17Updated 8 months ago
• jaymahat / scGROseq
  scGRO-seq analyses codes
  ☆12Updated last year
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 4 months ago
• XiaoTaoWang / StripeCaller
  A toolkit for analyzing architectural stripes
  ☆19Updated 5 months ago
• ijuric / MAPS
  ☆18Updated last year
• aertslab / scATAC-seq_benchmark
  ☆17Updated last year
• SchulzLab / STARE
  TF analysis from epigenetic and Hi-C data
  ☆17Updated last month
• ajaynadig / TRADEtools
  ☆17Updated last month
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆38Updated 3 years ago
• AdelmanLab / NIH_scripts
  A collection of perl scripts for NGS analysis
  ☆16Updated 7 months ago
• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆17Updated last month
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated last year
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• mardzix / bcd_nano_CUTnTag
  ☆11Updated last year
• jessica1338 / LinTIMaT
  Lineage Tracing by Integrating Mutation and Transcriptomic data
  ☆12Updated 4 years ago
• gxiaolab / scAllele
  ☆33Updated last year
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆19Updated 10 months ago
• dbrg77 / ISSAAC-seq
  ☆17Updated 2 years ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated last year