Alternatives and similar repositories for BICCN_M1_Evo

Users that are interested in BICCN_M1_Evo are comparing it to the libraries listed below

• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆61Updated 2 years ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆75Updated last year
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆63Updated 2 years ago
• teresho4 / scRNA-seq_atlas_Hs_PBMC_aging
  ☆17Updated 2 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆109Updated 4 months ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆48Updated 2 months ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆77Updated 2 years ago
• califano-lab / PISCES
  R package for Protein activity analysis of single-cell RNAseq.
  ☆83Updated 2 years ago
• zijianni / SpotClean
  R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
  ☆32Updated last year
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago
• TiedemannLab / sciCNV
  Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution
  ☆13Updated 3 years ago
• mathyslab7 / ROSMAP_snRNAseq_PFC
  ☆31Updated 2 years ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆83Updated last year
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 10 months ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆35Updated 5 years ago
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆56Updated 4 months ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆73Updated 3 weeks ago
• Zhiliang-Bai / Patho-DBiT
  Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.
  ☆12Updated last year
• Coolgenome / iTALK
  ☆62Updated 6 years ago
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆78Updated last month
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 4 months ago
• chloelulu / scMayoMap
  ☆22Updated last year
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• mahmoudibrahim / KidneyMap
  ☆14Updated 2 months ago
• linnarsson-lab / developing-human-brain
  ☆35Updated last year
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆124Updated 11 months ago
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆95Updated 4 years ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆42Updated 2 years ago