Alternatives and similar repositories for BICCN_M1_Evo

Users that are interested in BICCN_M1_Evo are comparing it to the libraries listed below

• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆64Updated 2 years ago
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆63Updated 2 years ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆83Updated 2 years ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆49Updated 4 months ago
• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated 8 months ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆110Updated 6 months ago
• linnarsson-lab / developing-human-brain
  ☆36Updated 3 weeks ago
• mahmoudibrahim / KidneyMap
  ☆14Updated 4 months ago
• lulizou / spASE
  detecting spatial patterns of allele-specific expression
  ☆10Updated last year
• navinlabcode / CellTrek
  ☆126Updated 3 years ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆84Updated 2 years ago
• teresho4 / scRNA-seq_atlas_Hs_PBMC_aging
  ☆17Updated 2 years ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆27Updated 3 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• immunogenomics / sceQTL
  Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)
  ☆20Updated 2 years ago
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆52Updated 10 months ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 6 months ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆78Updated 3 months ago
• ZhuangLab / SpatialBrainAgingCell22
  ☆14Updated 2 years ago
• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆57Updated 2 weeks ago
• califano-lab / PISCES
  R package for Protein activity analysis of single-cell RNAseq.
  ☆85Updated 2 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆76Updated 3 months ago
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆97Updated 4 years ago
• Lan-lab / sc-GC
  ☆31Updated 3 years ago
• zijianni / SpotClean
  R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
  ☆33Updated last year
• data2intelligence / CytoSig
  ☆59Updated last year
• Zhiliang-Bai / Patho-DBiT
  Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.
  ☆13Updated last year
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆76Updated last year
• yqq-chen / CRC_ICB
  ☆32Updated last year