pachterlab / SpatialFeatureExperiment
Extension of SpatialExperiment with sf
☆46Updated this week
Alternatives and similar repositories for SpatialFeatureExperiment:
Users that are interested in SpatialFeatureExperiment are comparing it to the libraries listed below
- Single-cell analysis with non-negative matrix factorization☆42Updated 3 months ago
- ☆68Updated last week
- An R package for visualising cell-cell interactions☆43Updated 5 months ago
- R package for analysing single cell data☆50Updated 2 years ago
- ☆59Updated 6 months ago
- From geospatial to spatial -omics☆84Updated last week
- Brings SingleCellExperiment objects to the tidyverse☆36Updated last month
- Trans-association between HLA and TCR-CDR3☆15Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 3 months ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆19Updated 6 months ago
- Toolkit for Single-Cell Velocity☆54Updated last month
- R package for Flexible dot plots☆29Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆68Updated 9 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆26Updated last year
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated 2 weeks ago
- R package to do the Ligand Receptor Analysis Visualization☆41Updated this week
- An r package that works as a wrapper to homologene☆42Updated last year
- Access and Format Single-cell RNA-seq Datasets from Public Resources☆35Updated last month
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 3 years ago
- A General Framework for Consensus Partitioning☆62Updated 11 months ago
- R API and htmlwidget for Vitessce☆39Updated 3 months ago
- Cell type pipes for R☆51Updated last year
- An R-based interface for loom files☆66Updated 4 years ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆48Updated last week
- Pan-Cancer Single Cell Classifier☆63Updated 8 months ago
- Querying cellular states and programs by learning representations of gene sets☆12Updated 6 months ago
- ☆16Updated 9 months ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 3 years ago