Extension of SpatialExperiment with sf
☆57May 6, 2026Updated last month
Alternatives and similar repositories for SpatialFeatureExperiment
Users that are interested in SpatialFeatureExperiment are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- From geospatial to spatial -omics☆103May 8, 2026Updated last month
- Compute the neighborhood consolidation matrix and identify SHRs☆14Jun 12, 2025Updated 11 months ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆18May 19, 2026Updated 3 weeks ago
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated last year
- BANKSY: spatial clustering☆148May 30, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data☆31May 31, 2026Updated last week
- ☆74May 28, 2025Updated last year
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated 8 months ago
- ☆12Mar 18, 2026Updated 2 months ago
- ☆100May 4, 2026Updated last month
- A Toolbox for Spatial Transcriptomics Analysis☆168May 6, 2025Updated last year
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆179Jan 8, 2026Updated 5 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆15Aug 17, 2023Updated 2 years ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆107May 27, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Toolkit for Single-Cell Velocity☆61Apr 17, 2026Updated last month
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆461Jan 22, 2026Updated 4 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆97Apr 30, 2026Updated last month
- R API and htmlwidget for Vitessce☆45Aug 13, 2025Updated 9 months ago
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 8 months ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆24Jul 10, 2024Updated last year
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆281Jun 1, 2026Updated last week
- Code for the spatialLIBD R/Bioconductor package and shiny app☆113May 20, 2026Updated 2 weeks ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆225Apr 26, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Spatial omics analysis toolbox☆375May 26, 2026Updated 2 weeks ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆41Nov 18, 2025Updated 6 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆156Aug 3, 2025Updated 10 months ago
- Single-cell Mutual Information-based Network Engineering Ranger☆25Aug 28, 2025Updated 9 months ago
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated last year
- ☆12Oct 19, 2024Updated last year
- Spatially aware dimension reduction for spatial transcriptomics.☆68Mar 18, 2025Updated last year
- ☆11Sep 5, 2018Updated 7 years ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆21May 7, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Spatial Transcriptomics Capture Location Deconvolution☆208Oct 20, 2025Updated 7 months ago
- High dimensional weighted gene co-expression network analysis☆476Mar 13, 2026Updated 2 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆301May 11, 2026Updated 3 weeks ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆296Jun 17, 2025Updated 11 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- Toolkit for metacell analysis☆23Aug 8, 2024Updated last year
- R client for the OmniPath web service☆166Apr 29, 2026Updated last month