Alternatives and similar repositories for SpatialFeatureExperiment:

Users that are interested in SpatialFeatureExperiment are comparing it to the libraries listed below

• ludvigla / semla
  ☆69Updated 3 weeks ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆44Updated 3 months ago
• Sarah145 / CCPlotR
  An R package for visualising cell-cell interactions
  ☆43Updated 6 months ago
• pachterlab / voyager
  From geospatial to spatial -omics
  ☆85Updated 2 weeks ago
• stemangiola / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated last month
• drighelli / SpatialExperiment
  ☆59Updated 7 months ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 2 years ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆54Updated last month
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆42Updated last year
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆19Updated 2 years ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated last year
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆69Updated 9 months ago
• niaid / dsb
  Normalize CITEseq Data
  ☆65Updated 8 months ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• phipsonlab / speckle
  R package for analysing single cell data
  ☆52Updated 2 years ago
• nullranges / nullranges
  Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…
  ☆27Updated last year
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆44Updated 4 years ago
• pachterlab / concordexR
  Compute the neighborhood consolidation matrix and identify SHRs
  ☆13Updated 3 weeks ago
• immunogenomics / cdr3-QTL
  Trans-association between HLA and TCR-CDR3
  ☆15Updated last year
• mojaveazure / loomR
  An R-based interface for loom files
  ☆66Updated 4 years ago
• CostaLab / CrossTalkeR
  R package to do the Ligand Receptor Analysis Visualization
  ☆41Updated this week
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆29Updated 3 weeks ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆30Updated last year
• Teichlab / cellity
  ☆37Updated 8 years ago
• theislab / destiny
  R package for single cell and other data analysis using diffusion maps
  ☆81Updated 2 months ago
• showteeth / scfetch
  Access and Format Single-cell RNA-seq Datasets from Public Resources
  ☆35Updated last month
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆36Updated 2 years ago
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 4 years ago
• YuLab-SMU / ggsc
  🧠 Visualizing Single Cell and Spatial Transcriptomics
  ☆47Updated 3 months ago
• satijalab / seurat-object
  ☆25Updated this week