r3fang / SnapATAC
Analysis Pipeline for Single Cell ATAC-seq
☆314Updated last year
Alternatives and similar repositories for SnapATAC:
Users that are interested in SnapATAC are comparing it to the libraries listed below
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆406Updated last month
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆209Updated last month
- Single-cell Transcriptome and Regulome Analysis Pipeline☆278Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆289Updated 4 years ago
- A package to help convert different single-cell data formats to each other☆413Updated last year
- ☆226Updated 8 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆266Updated 2 years ago
- ☆257Updated 4 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆316Updated this week
- A toolkit for single-cell immune profiling☆328Updated this week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆314Updated 8 months ago
- A tool for detecting somatic variants in single cell data☆193Updated 6 months ago
- R package for integrating and analyzing multiple single-cell datasets☆408Updated 2 months ago
- ☆353Updated 3 years ago
- Collections of library structure and sequence of popular single cell genomic methods☆453Updated 3 months ago
- TCR and BCR assembly from RNA-seq data☆298Updated last week
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆221Updated 3 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆448Updated last week
- NicheNet: predict active ligand-target links between interacting cells☆521Updated 3 weeks ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆226Updated last year
- Interpretation of cell states using reference single-cell maps☆268Updated 2 weeks ago
- my notes for scATACseq analysis☆122Updated 10 months ago
- Single RNA-seq data analysis with R (Finland, May, 2019)☆221Updated 2 years ago
- Benchmarking computational single cell ATAC-seq methods☆182Updated 4 years ago
- Analysis of single cell RNA-seq data course☆131Updated 2 years ago
- 10x Genomics Single Cell Analysis☆390Updated last month
- ENCODE ATAC-seq pipeline☆407Updated 8 months ago
- Community-provided extensions to Seurat☆324Updated 4 months ago
- Single-cell epigenomics analysis tools☆247Updated last week
- Intro to ChIPseq using HPC☆300Updated 2 years ago