Alternatives and similar repositories for SnapATAC

Users that are interested in SnapATAC are comparing it to the libraries listed below

• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆296Updated 2 years ago
• GreenleafLab / ArchR
  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
  ☆441Updated 10 months ago
• welch-lab / liger
  R package for integrating and analyzing multiple single-cell datasets
  ☆420Updated last week
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆315Updated 5 years ago
• Teichlab / cellphonedb
  ☆359Updated 4 years ago
• NBISweden / excelerate-scRNAseq
  Single RNA-seq data analysis with R (Finland, May, 2019)
  ☆227Updated 3 years ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆302Updated 3 years ago
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆450Updated last year
• navinlabcode / copykat
  ☆259Updated 2 months ago
• cole-trapnell-lab / monocle-release
  ☆291Updated 3 years ago
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆336Updated last month
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆335Updated this week
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆287Updated last year
• IanevskiAleksandr / sc-type
  ☆280Updated last year
• pinellolab / scATAC-benchmarking
  Benchmarking computational single cell ATAC-seq methods
  ☆185Updated 5 years ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆332Updated 4 years ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆318Updated 2 years ago
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆159Updated 3 years ago
• broadinstitute / CellBender
  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
  ☆367Updated 4 months ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆132Updated last year
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆215Updated last year
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆277Updated last year
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆487Updated 7 months ago
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆356Updated 2 weeks ago
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆237Updated 3 weeks ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆229Updated 3 weeks ago
• tabdelaal / scRNAseq_Benchmark
  Bench-marking classification tools for scRNA-seq data
  ☆189Updated 3 years ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆440Updated last year
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆303Updated 2 months ago
• satijalab / seurat-wrappers
  Community-provided extensions to Seurat
  ☆353Updated last year