r3fang / SnapATACLinks
Analysis Pipeline for Single Cell ATAC-seq
☆318Updated 2 years ago
Alternatives and similar repositories for SnapATAC
Users that are interested in SnapATAC are comparing it to the libraries listed below
Sorting:
- Single-cell Transcriptome and Regulome Analysis Pipeline☆291Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆303Updated 5 years ago
- ☆357Updated 3 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆291Updated 2 years ago
- ☆250Updated last year
- TCR and BCR assembly from RNA-seq data☆324Updated 2 weeks ago
- A package to help convert different single-cell data formats to each other☆438Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆421Updated 2 weeks ago
- ☆289Updated 3 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆431Updated 6 months ago
- ☆275Updated 10 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆354Updated last month
- Single cell RNA sequencing analysis course☆221Updated last week
- A tool for detecting somatic variants in single cell data☆212Updated 11 months ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆225Updated this week
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆284Updated last year
- Bench-marking classification tools for scRNA-seq data☆188Updated 3 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆330Updated this week
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆233Updated 4 months ago
- Single RNA-seq data analysis with R (Finland, May, 2019)☆225Updated 3 years ago
- A toolkit for single-cell immune profiling☆345Updated this week
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆295Updated 2 months ago
- T/B cell receptor sequencing analysis notes☆263Updated 9 months ago
- my notes for scATACseq analysis☆132Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆231Updated 2 years ago
- Panoramic stitching of single cell data☆289Updated 2 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆477Updated 3 months ago
- Intro to ChIPseq using HPC☆311Updated 2 years ago
- NicheNet: predict active ligand-target links between interacting cells☆561Updated last month