Alternatives and similar repositories for starCAT

Users that are interested in starCAT are comparing it to the libraries listed below

• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆26Updated 3 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 8 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆28Updated 6 months ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 8 months ago
• Zhen-Miao / PICsnATAC
  Paired Insertion Counting for snATAC-seq data
  ☆17Updated last month
• gxiaolab / scAllele
  ☆34Updated last year
• jyyulab / scMINER
  Single-cell Mutual Information-based Network Engineering Ranger
  ☆17Updated 3 weeks ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• qingnanl / gsdensity
  ☆9Updated 11 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆27Updated 2 months ago
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆20Updated 3 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 6 years ago
• wenweixiong / MARVEL
  ☆49Updated 10 months ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆31Updated 11 months ago
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆19Updated 3 months ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated 3 weeks ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated 9 months ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆20Updated last year
• UPSUTER / GEMLI
  ☆32Updated 5 months ago
• KChen-lab / MEDALT
  Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
  ☆19Updated last year
• satijalab / Mixscale
  ☆18Updated 2 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆56Updated last year
• jig4003 / Ragas
  R tools for analysis and visualization of single-cell subclustering data
  ☆17Updated last year
• Henikoff / scCUT-Tag
  ☆17Updated 2 years ago
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆14Updated 3 years ago
• PFPrzytycki / CellWalkR
  CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
  ☆18Updated 3 weeks ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• BioBam / scMaSigPro
  Implementation of MaSigPro for scRNA-Seq Data
  ☆14Updated 10 months ago