Alternatives and similar repositories for starCAT

Users that are interested in starCAT are comparing it to the libraries listed below

• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 6 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆25Updated 3 years ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆28Updated 5 months ago
• gxiaolab / scAllele
  ☆33Updated last year
• Zhen-Miao / PICsnATAC
  Paired Insertion Counting for snATAC-seq data
  ☆17Updated this week
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 7 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆25Updated last month
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 5 months ago
• phipsonlab / speckle
  R package for analysing single cell data
  ☆55Updated 2 years ago
• qingnanl / gsdensity
  ☆9Updated 10 months ago
• UPSUTER / GEMLI
  ☆31Updated 3 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆55Updated last year
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• wenweixiong / MARVEL
  ☆49Updated 9 months ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆14Updated 3 years ago
• Henikoff / scCUT-Tag
  ☆16Updated 2 years ago
• ajaynadig / TRADEtools
  ☆19Updated 2 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆42Updated last year
• satijalab / Mixscale
  ☆18Updated 3 weeks ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• saeyslab / NicheNet_LiverCellAtlas
  Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022
  ☆8Updated 3 years ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆36Updated last week
• gambalab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆18Updated last year
• ventolab / cellphonedbviz
  Interactive visualisation of CellphoneDB results
  ☆10Updated 4 months ago
• Teichlab / sctk
  ☆36Updated 7 months ago
• BioBam / scMaSigPro
  Implementation of MaSigPro for scRNA-Seq Data
  ☆14Updated 9 months ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆22Updated last year
• XZouProjects / scCODE
  The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data
  ☆13Updated last year