CSOgroup / cellcharter_analysesLinks
☆11Updated last year
Alternatives and similar repositories for cellcharter_analyses
Users that are interested in cellcharter_analyses are comparing it to the libraries listed below
Sorting:
- ☆9Updated 11 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆14Updated last year
- Waelchli-lab / Single-cell-atlas-of-the-human-brain-vasculature-accross-development-adulthood-and-diseaseMolecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆13Updated 11 months ago
- Computational pipeline to process EasySci-RNA data.☆20Updated last year
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆12Updated 9 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆23Updated 3 weeks ago
- ☆15Updated 4 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- ☆38Updated 8 months ago
- ☆11Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 months ago
- cell type specific, trait-associated gene regulation☆27Updated 2 months ago
- python API to the CoGAPS NMF package☆19Updated last month
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆14Updated 6 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆28Updated last year
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated 8 months ago
- Interactive visualisation of CellphoneDB results☆10Updated 5 months ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆19Updated last year
- Code used to process the data of the HBCA project☆27Updated last year
- ☆18Updated 10 months ago
- ☆21Updated last week
- ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineageCode and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆9Updated 5 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- ☆20Updated last year
- Cell-type Relationship Analysis Workflow Done Across Distances☆32Updated last week
- ☆19Updated 3 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- ☆10Updated 2 years ago