☆59Mar 18, 2026Updated 4 months ago
Alternatives and similar repositories for cicero-release
Users that are interested in cicero-release are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repo for website and other code for mouse sci-ATAC-seq project☆30Oct 1, 2020Updated 5 years ago
- Automated cell type classification☆116Jan 3, 2025Updated last year
- R toolkit for the analysis of single-cell chromatin data☆424Updated this week
- A tool for unsupervised projection of single cell RNA-seq data☆100Nov 24, 2020Updated 5 years ago
- chromatin Variability Across Regions (of the genome!)☆193May 1, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code relevant to sci-ATAC-seq of Drosophila embryogenesis.☆22Jun 9, 2019Updated 7 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆342Apr 23, 2024Updated 2 years ago
- ☆463May 26, 2026Updated 2 months ago
- Bead-based single-cell atac processing☆33Jul 6, 2026Updated 3 weeks ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- ☆20Jun 8, 2023Updated 3 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 8 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆188Jun 24, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Reconstruction of complex single-cell trajectories using CellRouter☆46Dec 14, 2018Updated 7 years ago
- Tools for single-cell data processing☆137May 27, 2024Updated 2 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆147Apr 5, 2024Updated 2 years ago
- ☆30Jul 25, 2024Updated 2 years ago
- Code for the MNN manuscript figures☆49Oct 1, 2018Updated 7 years ago
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 5 months ago
- URD - Reconstruction of Branching Developmental Trajectories☆128Jun 29, 2021Updated 5 years ago
- Detecting sites of genomic enrichment☆203May 8, 2023Updated 3 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆256Jun 28, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23May 14, 2025Updated last year
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆24Jul 10, 2024Updated 2 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- Inferring CNV data from single cell ATAC seq☆28Jun 24, 2025Updated last year
- Fast motif matching in R☆49Jan 24, 2024Updated 2 years ago
- Single cell trajectory detection☆330Jul 15, 2026Updated last week
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- ☆364Dec 9, 2021Updated 4 years ago
- ☆12Mar 18, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 4 years ago
- Doublet detection in single-cell RNA-seq data.☆98Feb 6, 2025Updated last year
- Clone identification from single-cell data☆65Nov 10, 2022Updated 3 years ago
- AUCell: score single cells with gene regulatory networks☆201Mar 9, 2024Updated 2 years ago
- ☆15Jun 4, 2023Updated 3 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆177Jan 26, 2024Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆118Oct 28, 2024Updated last year