cole-trapnell-lab / cicero-release
☆55Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for cicero-release
- mutation(barcode) caller for 10x single cell data☆43Updated 4 years ago
- ☆53Updated 3 years ago
- scWGCNA☆54Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆75Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆43Updated 3 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆65Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆89Updated 3 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆42Updated 8 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆56Updated 2 years ago
- ☆59Updated 4 years ago
- Mouse cell atlas☆59Updated 4 years ago
- Single Cell Analysis of Five'Ends☆44Updated 7 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆72Updated 2 months ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆29Updated last year
- ☆33Updated 5 years ago
- Functional Inference of Gene Regulation☆36Updated 4 months ago
- Single cell RNA-seq analysis bundle☆33Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆60Updated 11 months ago
- Clone of the Bioconductor repository for the scran package.☆40Updated 2 months ago
- Clone identification from single-cell data☆59Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- ☆77Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆67Updated 2 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆73Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆61Updated 6 months ago