carmonalab / GeneNMFLinks
Methods to discover gene programs on single-cell data
☆142Updated last month
Alternatives and similar repositories for GeneNMF
Users that are interested in GeneNMF are comparing it to the libraries listed below
Sorting:
- Significance analysis for clustering single-cell RNA-sequencing data☆118Updated 11 months ago
- Cell type prioritization in single-cell data☆124Updated 10 months ago
- Quantifying metabolism activity at the single-cell resolution☆138Updated 2 months ago
- AUCell: score single cells with gene regulatory networks☆166Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆154Updated 2 weeks ago
- The integration of single cell rank-based gene set enrichment analysis☆130Updated last month
- Gene set scoring for single-cell data☆159Updated 3 months ago
- Assessing the purity of single cell population☆134Updated 3 years ago
- BANKSY: spatial clustering☆119Updated 2 weeks ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆133Updated 6 months ago
- ☆125Updated 3 years ago
- Multiome GRN inference.☆126Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated last month
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 4 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆123Updated 11 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆60Updated 8 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆95Updated 4 years ago
- A Bayesian model for compositional single-cell data analysis☆173Updated 2 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆83Updated last year
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆164Updated 5 months ago
- ☆106Updated 4 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆76Updated 2 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆103Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆108Updated 2 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆128Updated last year
- Methods to compute Local Inverse Simpson's Index (LISI)☆68Updated 3 years ago
- scDIOR: Single cell data IO softwaRe☆145Updated 3 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- A tool for semi-automatic cell type harmonization and integration☆109Updated 5 months ago