Alternatives and similar repositories for GeneNMF

Users that are interested in GeneNMF are comparing it to the libraries listed below

• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆117Updated 10 months ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆121Updated 8 months ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆149Updated 6 months ago
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆136Updated 2 weeks ago
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆127Updated last week
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆155Updated 3 months ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆169Updated 2 years ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆131Updated 4 months ago
• PaulingLiu / ROGUE
  Assessing the purity of single cell population
  ☆130Updated 3 years ago
• martinjzhang / scDRS
  Single-cell disease relevance score (scDRS)
  ☆141Updated 8 months ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆107Updated 2 months ago
• navinlabcode / CellTrek
  ☆122Updated 3 years ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆171Updated last week
• prabhakarlab / Banksy
  BANKSY: spatial clustering
  ☆117Updated 3 weeks ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆82Updated last year
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆75Updated 11 months ago
• YosefLab / Compass
  In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
  ☆109Updated 5 months ago
• quadbio / Pando
  Multiome GRN inference.
  ☆124Updated last year
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆76Updated this week
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆154Updated 2 months ago
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆117Updated 10 months ago
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆103Updated last year
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆144Updated 3 years ago
• Sijin-ZhangLab / PanMyeloid
  ☆104Updated 4 years ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆159Updated last year
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆105Updated 2 years ago
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆73Updated 5 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆94Updated 3 years ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆172Updated 2 months ago
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆95Updated 4 years ago