carmonalab / GeneNMFLinks
Methods to discover gene programs on single-cell data
☆140Updated last month
Alternatives and similar repositories for GeneNMF
Users that are interested in GeneNMF are comparing it to the libraries listed below
Sorting:
- Significance analysis for clustering single-cell RNA-sequencing data☆117Updated 11 months ago
- Quantifying metabolism activity at the single-cell resolution☆137Updated last month
- Cell type prioritization in single-cell data☆123Updated 9 months ago
- The integration of single cell rank-based gene set enrichment analysis☆129Updated last month
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆150Updated 6 months ago
- AUCell: score single cells with gene regulatory networks☆162Updated last year
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆159Updated 4 months ago
- ☆125Updated 3 years ago
- Gene set scoring for single-cell data☆158Updated 3 months ago
- Assessing the purity of single cell population☆132Updated 3 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆107Updated 3 months ago
- A Bayesian model for compositional single-cell data analysis☆172Updated 2 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆77Updated 2 weeks ago
- R package to visualize gene expression data based on weighted kernel density estimation☆103Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆132Updated 5 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆88Updated 2 months ago
- ☆106Updated 4 years ago
- reticulate-free single cell format conversion☆178Updated 2 weeks ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆83Updated last year
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆95Updated 4 years ago
- BANKSY: spatial clustering☆118Updated 2 weeks ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆120Updated 11 months ago
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆60Updated 7 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated 11 months ago
- scDIOR: Single cell data IO softwaRe☆145Updated 3 years ago
- trajectory inference☆104Updated 6 months ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆117Updated 10 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆110Updated 6 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆74Updated 2 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆67Updated 3 years ago