yunguan-wang / SpaciaLinks
☆30Updated 8 months ago
Alternatives and similar repositories for Spacia
Users that are interested in Spacia are comparing it to the libraries listed below
Sorting:
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Updated last year
- ☆32Updated 10 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Updated 6 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆44Updated 4 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 10 months ago
- ☆34Updated 2 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆53Updated last year
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 10 months ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆29Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 11 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆36Updated 2 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆35Updated 8 months ago
- ☆25Updated 10 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last month
- Code for the spatial transcriptomic paper on IPF lungs☆19Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- ☆10Updated 2 years ago
- ☆25Updated 2 years ago
- ☆21Updated 6 months ago
- ☆23Updated 2 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 5 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆26Updated last year
- ☆60Updated 4 months ago
- Publically accessible code for DIISCO method☆12Updated 2 months ago