yunguan-wang / SpaciaLinks
☆27Updated 3 weeks ago
Alternatives and similar repositories for Spacia
Users that are interested in Spacia are comparing it to the libraries listed below
Sorting:
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated 11 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 7 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 3 months ago
- ☆12Updated 4 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- ☆28Updated 3 months ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆28Updated 10 months ago
- ☆10Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆65Updated 7 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 3 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆47Updated 4 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- ☆22Updated last year
- Spatial transcriptomics of heart tissue☆21Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 6 months ago
- ☆15Updated 3 months ago
- ☆55Updated last year
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆36Updated 9 months ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 2 months ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆39Updated last week
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated 3 weeks ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 4 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆18Updated 7 months ago
- ☆16Updated 6 months ago
- R package for pathway analysis in scRNA-seq data☆74Updated 9 months ago