kakitone / finishingToolLinks
finshingTool
☆54Updated 8 years ago
Alternatives and similar repositories for finishingTool
Users that are interested in finishingTool are comparing it to the libraries listed below
Sorting:
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- TGS scaffolding☆47Updated 3 years ago
- ☆44Updated 8 years ago
- ☆33Updated 4 years ago
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- ☆78Updated 5 years ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- A program to call variants from genome alignment☆81Updated 5 months ago
- Compute N50/NG50 and auN/auNG☆32Updated 2 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- ☆66Updated last month
- Identification of transposable element families from pangenome polymorphisms☆53Updated 4 months ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- Show pangenome graphs in an easy way☆56Updated 2 months ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆44Updated 5 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 9 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Genome Pair Rapid Dotter☆66Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago