PacificBiosciences / pb-assembly
PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
☆117Updated 4 years ago
Alternatives and similar repositories for pb-assembly
Users that are interested in pb-assembly are comparing it to the libraries listed below
Sorting:
- Pangenome-based genome inference☆127Updated last month
- accurate LiftOver tool for new genome assemblies☆126Updated 9 months ago
- ☆71Updated 5 years ago
- ☆78Updated 10 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- Same species annotation lift over pipeline.☆97Updated last year
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆201Updated last year
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆97Updated last week
- Genomic related tools☆70Updated 3 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- Dfam Transposable Element Tools Docker container.☆91Updated last week
- An ultra-fast and efficient genomic tool for coverage calculation☆148Updated last month
- A list of software for pangenomics☆112Updated this week
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Python programs for processing GFF3 files☆97Updated last year
- This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Updated 6 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated 6 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆133Updated last month
- source code for EVM☆110Updated 5 months ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆95Updated this week
- Wally: Visualization of aligned sequencing reads and contigs☆115Updated last month
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆102Updated 2 weeks ago
- Research release basecalling models and configurations☆110Updated 10 months ago
- ☆91Updated last week
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆102Updated last year
- Fast and accurately polish the genome generated by long reads.☆223Updated 4 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆101Updated 2 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆145Updated 2 months ago