Alternatives and similar repositories for pb-assembly

Users that are interested in pb-assembly are comparing it to the libraries listed below

• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆100Updated last week
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• xiaochuanle / MECAT2
  ☆71Updated 5 years ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆134Updated last year
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆116Updated 9 months ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆99Updated last year
• xuzhougeng / Genomic_tools
  Genomic related tools
  ☆71Updated 3 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆188Updated last year
• irusri / Extract-intron-from-gff3
  This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.
  ☆33Updated 6 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 3 years ago
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆157Updated 5 months ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆144Updated last month
• apetkau / orthomcl-pipeline
  Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/
  ☆80Updated 5 years ago
• DerKevinRiehl / TransposonUltimate
  TransposonUltimate - a holistic set of tools for transposon identification
  ☆84Updated 3 years ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆109Updated last year
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆66Updated 3 months ago
• PacificBiosciences / DevNet
  The DevNet project on github stores the PacBio DevNet website.
  ☆116Updated 7 years ago
• xiaochuanle / MECAT
  MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads
  ☆109Updated 4 years ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆104Updated 3 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 3 months ago
• hyphaltip / genome-scripts
  Genome Scripts used in fungal comparative genomics
  ☆67Updated 4 years ago
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆149Updated last week
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆90Updated last year
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆72Updated 3 years ago
• fbemm / onefc-oneasm
  Simple code snippets and data for the One Flowcell - One Assembly study
  ☆35Updated 7 years ago
• BGI-shenzhen / Reseqtools
  A Toolkit for analyzing next-generation DNA Re-Sequencing data
  ☆84Updated 3 years ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆158Updated 6 months ago