Alternatives and similar repositories for pb-assembly

Users that are interested in pb-assembly are comparing it to the libraries listed below

• xiaochuanle / MECAT2
  ☆71Updated 5 years ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆99Updated last month
• xuzhougeng / Genomic_tools
  Genomic related tools
  ☆71Updated 3 years ago
• DerKevinRiehl / TransposonUltimate
  TransposonUltimate - a holistic set of tools for transposon identification
  ☆84Updated 3 years ago
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆89Updated last year
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆133Updated last year
• irusri / Extract-intron-from-gff3
  This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.
  ☆33Updated 6 years ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆116Updated 8 months ago
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆157Updated 4 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆103Updated 2 months ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆108Updated last year
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• xiaochuanle / MECAT
  MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads
  ☆109Updated 4 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆188Updated last year
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆142Updated last month
• bmansfeld / QTLseqr
  QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
  ☆79Updated 5 years ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆155Updated 5 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆193Updated 2 months ago
• dentearl / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆109Updated 3 years ago
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆94Updated 8 months ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆98Updated last year
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 2 months ago
• yjx1217 / RMRB
  This is an archive version of old RepBase library (v20170127) for RepeatMasker.
  ☆37Updated 4 years ago
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆103Updated last month
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 3 years ago
• BGI-shenzhen / VCF2Dis
  VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…
  ☆97Updated 2 months ago
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆105Updated 2 weeks ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆87Updated last month
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆66Updated 3 months ago