PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
☆117Sep 11, 2020Updated 5 years ago
Alternatives and similar repositories for pb-assembly
Users that are interested in pb-assembly are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆71Apr 28, 2020Updated 6 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆530Sep 27, 2023Updated 2 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆291Feb 4, 2025Updated last year
- haplotypic duplication identification tool☆284Oct 30, 2025Updated 6 months ago
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Mar 4, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)☆80Oct 12, 2018Updated 7 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- A single molecule sequence assembler for genomes large and small.☆700Feb 24, 2026Updated 2 months ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆72Nov 12, 2020Updated 5 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆768Apr 15, 2026Updated 3 weeks ago
- 3D de novo assembly (3D DNA) pipeline☆225Nov 29, 2023Updated 2 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- Laboratory Information Management System☆37Oct 30, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆177Apr 22, 2026Updated 2 weeks ago
- ☆78Dec 4, 2019Updated 6 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Reference-free profiling of polyploid genomes☆145Oct 2, 2025Updated 7 months ago
- Making diploid assembly becomes common practice for genomic study☆30Oct 2, 2017Updated 8 years ago
- Genome annotation with AUGUSTUS☆330Aug 15, 2025Updated 8 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆922Apr 3, 2026Updated last month
- Fast and accurate de novo assembler for long reads☆400May 10, 2024Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Mar 9, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆147Mar 19, 2026Updated last month
- ☆78Jun 12, 2020Updated 5 years ago
- VGP repository for the genome assembly working group☆193Mar 31, 2026Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆196May 11, 2025Updated 11 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 6 years ago
- ☆46Jun 21, 2020Updated 5 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆380Apr 10, 2022Updated 4 years ago
- Fast genome analysis from unassembled short reads☆320Apr 8, 2024Updated 2 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆903Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- software tools for haplotype assembly from sequence data☆231Feb 9, 2025Updated last year
- Extensive de-novo TE Annotator☆443Apr 5, 2026Updated last month
- Yet another k-mer analyzer☆169Dec 30, 2025Updated 4 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Mar 14, 2023Updated 3 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆564Feb 14, 2024Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- 🪡Correct and scaffold assemblies using long reads☆57Apr 1, 2026Updated last month