PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
☆117Sep 11, 2020Updated 5 years ago
Alternatives and similar repositories for pb-assembly
Users that are interested in pb-assembly are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆71Apr 28, 2020Updated 6 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆529Sep 27, 2023Updated 2 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆293Feb 4, 2025Updated last year
- haplotypic duplication identification tool☆286Oct 30, 2025Updated 6 months ago
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Mar 4, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)☆80Oct 12, 2018Updated 7 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- A single molecule sequence assembler for genomes large and small.☆700Feb 24, 2026Updated 3 months ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆72Nov 12, 2020Updated 5 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆775May 15, 2026Updated last week
- 3D de novo assembly (3D DNA) pipeline☆225Nov 29, 2023Updated 2 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- Laboratory Information Management System☆37Oct 30, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆178Apr 22, 2026Updated last month
- ☆78Dec 4, 2019Updated 6 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Reference-free profiling of polyploid genomes☆145Oct 2, 2025Updated 7 months ago
- Making diploid assembly becomes common practice for genomic study☆30Oct 2, 2017Updated 8 years ago
- Genome annotation with AUGUSTUS☆330May 18, 2026Updated last week
- De novo assembler for single molecule sequencing reads using repeat graphs☆933Apr 3, 2026Updated last month
- Fast and accurate de novo assembler for long reads☆402May 10, 2024Updated 2 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆215May 12, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆147Mar 19, 2026Updated 2 months ago
- ☆78Jun 12, 2020Updated 5 years ago
- VGP repository for the genome assembly working group☆194Mar 31, 2026Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆196May 11, 2025Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 6 years ago
- ☆46Jun 21, 2020Updated 5 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆381Apr 10, 2022Updated 4 years ago
- Fast genome analysis from unassembled short reads☆320Apr 8, 2024Updated 2 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆913May 2, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- software tools for haplotype assembly from sequence data☆231Feb 9, 2025Updated last year
- Extensive de-novo TE Annotator☆446May 12, 2026Updated 2 weeks ago
- Yet another k-mer analyzer☆172Dec 30, 2025Updated 4 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Mar 14, 2023Updated 3 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆564Feb 14, 2024Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- 🪡Correct and scaffold assemblies using long reads☆57Apr 1, 2026Updated last month