PacificBiosciences / pb-assembly
PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
☆115Updated 4 years ago
Alternatives and similar repositories for pb-assembly:
Users that are interested in pb-assembly are comparing it to the libraries listed below
- Generate an interactive dot plot from mummer or minimap alignments☆195Updated last year
- Same species annotation lift over pipeline.☆96Updated last year
- An ultra-fast and efficient genomic tool for coverage calculation☆139Updated 5 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆132Updated 3 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- BAM Statistics, Feature Counting and Annotation☆146Updated 3 months ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆100Updated last month
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆138Updated last year
- ☆118Updated 2 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆106Updated last year
- Dfam Transposable Element Tools Docker container.☆88Updated 2 months ago
- Genomic related tools☆71Updated 3 years ago
- Python programs for processing GFF3 files☆96Updated 10 months ago
- ☆70Updated 4 years ago
- Fast and accurately polish the genome generated by long reads.☆217Updated 3 weeks ago
- Constructing a pangenome gene graph☆179Updated 6 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 8 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- ☆73Updated 6 months ago
- Pangenome-based genome inference☆121Updated this week
- accurate LiftOver tool for new genome assemblies☆118Updated 5 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆133Updated 3 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆140Updated 2 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- ☆110Updated last month
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆95Updated last year
- ☆165Updated 4 months ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆84Updated 3 weeks ago