BGI-shenzhen / PopLDdecayLinks
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
☆192Updated 9 months ago
Alternatives and similar repositories for PopLDdecay
Users that are interested in PopLDdecay are comparing it to the libraries listed below
Sorting:
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆178Updated last year
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆312Updated last year
- SMC++ infers population history from whole-genome sequence data.☆168Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆202Updated last year
- A library for running k-mers based GWAS☆109Updated 7 months ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆166Updated 2 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆96Updated 3 weeks ago
- Haplotype based scans for selection☆130Updated last month
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆256Updated 3 weeks ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆204Updated 2 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆254Updated 5 months ago
- 整理常用的群体遗传学分析流程和脚本☆109Updated last year
- 3D de novo assembly (3D DNA) pipeline☆212Updated last year
- Any Way to Show Multi genomic Synteny☆189Updated last month
- Fast and accurately polish the genome generated by long reads.☆225Updated 4 months ago
- Genome Assembly and Annotation Service code☆212Updated last year
- ☆209Updated 4 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated 7 months ago
- Code to compute the XP-CLR statistic to infer natural selection☆97Updated 2 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆214Updated last month
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆232Updated 4 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆90Updated 6 months ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆116Updated 4 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆172Updated 5 months ago
- An ultra-fast and efficient genomic tool for coverage calculation☆149Updated 2 months ago
- Tool to plot synteny and structural rearrangements between genomes☆306Updated last month
- General tools for genomic analyses.☆362Updated 3 months ago
- Fast and accurate de novo assembler for long reads☆387Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆138Updated 3 years ago
- Extensive de-novo TE Annotator☆384Updated 2 months ago