BGI-shenzhen / PopLDdecayLinks
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
☆200Updated last year
Alternatives and similar repositories for PopLDdecay
Users that are interested in PopLDdecay are comparing it to the libraries listed below
Sorting:
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆192Updated 4 months ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆175Updated 2 weeks ago
- SMC++ infers population history from whole-genome sequence data.☆167Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Haplotype based scans for selection☆136Updated 2 weeks ago
- A library for running k-mers based GWAS☆119Updated last year
- Code to compute the XP-CLR statistic to infer natural selection☆100Updated 3 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Updated 4 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆99Updated 2 months ago
- Any Way to Show Multi genomic Synteny☆210Updated 4 months ago
- 整理常用的群体遗传学分析流程和脚本☆115Updated last year
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆102Updated last month
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆321Updated 2 years ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆117Updated 4 years ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆271Updated last month
- ☆222Updated 9 months ago
- An ultra-fast and efficient genomic tool for coverage calculation☆161Updated 7 months ago
- Version 5 of the CAFE phylogenetics software☆151Updated 9 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆180Updated 11 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆110Updated 3 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆197Updated 5 months ago
- MutMap pipeline to identify causative mutations responsible for a phenotype☆61Updated 9 months ago
- Scripts for analysis used during the course☆92Updated last year
- PASA software☆194Updated 9 months ago
- Program for analysing NGS data.☆248Updated 8 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆179Updated last month
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- Software for painlessly estimating average nucleotide diversity within and between populations☆148Updated 3 weeks ago
- Collection of tools and resources for linked-reads☆12Updated 6 months ago