google / deepconsensusLinks
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
☆253Updated 10 months ago
Alternatives and similar repositories for deepconsensus
Users that are interested in deepconsensus are comparing it to the libraries listed below
Sorting:
- PEPPER-Margin-DeepVariant☆255Updated last year
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆198Updated last week
- Nanopore sequence read simulator☆288Updated 10 months ago
- genes and genomes at your fingertips☆405Updated 3 months ago
- Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing☆173Updated 2 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Updated 6 months ago
- De novo genome assembler for long uncorrected reads☆229Updated 2 years ago
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆161Updated last year
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆202Updated 5 months ago
- DRAGEN open-source mapper☆180Updated 2 years ago
- A curated list of awesome nanopore analysis tools.☆303Updated 6 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆319Updated 3 months ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆198Updated 2 years ago
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆289Updated last year
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆274Updated 3 years ago
- Oxford Nanopore Technologies fast5 API software☆154Updated last year
- A PyTorch Basecaller for Oxford Nanopore Reads☆428Updated last month
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204Updated 2 years ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆386Updated 6 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆234Updated 6 months ago
- Methylation/modified base calling separated from basecalling.☆181Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 11 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Assemble large genomes using short reads☆329Updated 9 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆208Updated 4 years ago
- [THIS REPO IS DEPRECATED] see newer repos: https://github.com/broadinstitute/viral-core https://github.com/broadinstitute/viral-assemble …☆195Updated last year
- Align proteins to genomes with splicing and frameshift☆393Updated this week
- Using Deep Learning to predict gene annotations☆264Updated 3 weeks ago
- Detection of m6A from direct RNA-Seq data☆130Updated 7 months ago
- A structural variation pipeline for short-read sequencing☆200Updated this week