google / deepconsensusLinks
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
☆240Updated 4 months ago
Alternatives and similar repositories for deepconsensus
Users that are interested in deepconsensus are comparing it to the libraries listed below
Sorting:
- DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …☆173Updated 2 months ago
- PEPPER-Margin-DeepVariant☆250Updated last year
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆170Updated this week
- Nanopore sequence read simulator☆274Updated 4 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆274Updated 2 years ago
- De novo genome assembler for long uncorrected reads☆223Updated last year
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆115Updated last week
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆287Updated this week
- Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing☆171Updated last year
- genes and genomes at your fingertips☆393Updated 2 months ago
- A curated list of awesome nanopore analysis tools.☆282Updated 2 weeks ago
- DRAGEN open-source mapper☆176Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated last week
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆153Updated 8 months ago
- Assemble large genomes using short reads☆321Updated 3 months ago
- Using Deep Learning to predict gene annotations☆202Updated last month
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆202Updated 4 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204Updated 2 years ago
- A minimap2 frontend for PacBio native data formats☆201Updated 4 months ago
- a long read simulator that can imitate many types of read problems☆228Updated 11 months ago
- Long read / genome alignment software☆291Updated 8 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 5 months ago
- Jasmine: SV Merging Across Samples☆217Updated 6 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆153Updated 2 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆254Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆271Updated last year
- Training models for basecalling Oxford Nanopore reads☆115Updated 3 years ago
- Structural variant toolkit for VCFs☆362Updated last week
- Nanopore demultiplexing, QC and alignment pipeline☆203Updated last week
- Long read based human genomic structural variation detection with cuteSV☆268Updated last month