google / deepconsensusLinks
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
☆241Updated 4 months ago
Alternatives and similar repositories for deepconsensus
Users that are interested in deepconsensus are comparing it to the libraries listed below
Sorting:
- PEPPER-Margin-DeepVariant☆252Updated last year
- DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …☆174Updated 2 months ago
- Nanopore sequence read simulator☆276Updated 5 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆274Updated 2 years ago
- Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing☆171Updated last year
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆115Updated last month
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆292Updated last week
- genes and genomes at your fingertips☆395Updated 2 months ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆176Updated this week
- DRAGEN open-source mapper☆176Updated last year
- De novo genome assembler for long uncorrected reads☆225Updated last year
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆153Updated 9 months ago
- Align proteins to genomes with splicing and frameshift☆378Updated 3 weeks ago
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆284Updated 7 months ago
- Structural variant toolkit for VCFs☆367Updated this week
- Oxford Nanopore Technologies fast5 API software☆154Updated last year
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆197Updated this week
- Long read based human genomic structural variation detection with cuteSV☆268Updated 2 months ago
- A structural variation pipeline for short-read sequencing☆191Updated this week
- Training models for basecalling Oxford Nanopore reads☆115Updated 3 years ago
- Fast genome analysis from unassembled short reads☆293Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆203Updated 4 years ago
- A curated list of awesome nanopore analysis tools.☆286Updated last month
- The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.☆121Updated 4 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 9 months ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆421Updated last month
- GFF and GTF file manipulation and interconversion☆304Updated last year
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆121Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆271Updated 6 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆234Updated this week