google / deepconsensusLinks
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
☆255Updated 10 months ago
Alternatives and similar repositories for deepconsensus
Users that are interested in deepconsensus are comparing it to the libraries listed below
Sorting:
- PEPPER-Margin-DeepVariant☆256Updated 2 years ago
- Nanopore sequence read simulator☆287Updated this week
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Updated 3 years ago
- Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing☆173Updated 2 years ago
- DRAGEN open-source mapper☆185Updated 2 years ago
- genes and genomes at your fingertips☆406Updated 4 months ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Updated 6 months ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆202Updated last week
- De novo genome assembler for long uncorrected reads☆229Updated 2 years ago
- Oxford Nanopore Technologies fast5 API software☆154Updated last year
- A structural variation pipeline for short-read sequencing☆201Updated this week
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆162Updated last year
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆326Updated 4 months ago
- DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …☆289Updated 3 months ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆205Updated 2 years ago
- A curated list of awesome nanopore analysis tools.☆305Updated 7 months ago
- Annotation and Ranking of Structural Variation☆286Updated 4 months ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆198Updated 3 years ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆428Updated 3 weeks ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆207Updated 4 years ago
- The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.☆124Updated 5 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆202Updated last month
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆289Updated 3 weeks ago
- A minimap2 frontend for PacBio native data formats☆210Updated last week
- Detection of m6A from direct RNA-Seq data☆131Updated 8 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279Updated 8 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Updated last year
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆126Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Deep learning framework for SV calling and genotyping☆113Updated 2 years ago