DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
☆256Mar 11, 2025Updated last year
Alternatives and similar repositories for deepconsensus
Users that are interested in deepconsensus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆141Feb 14, 2025Updated last year
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- Align subreads to ccs reads☆14Jun 11, 2025Updated 9 months ago
- Fast and accurate coordinate conversion between assemblies☆119Oct 9, 2025Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- Scalable gVCF merging and joint variant calling for population sequencing projects☆181Apr 12, 2024Updated last year
- Long read / genome alignment software☆312Dec 16, 2025Updated 3 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆108Jun 6, 2021Updated 4 years ago
- Yet another k-mer analyzer☆166Dec 30, 2025Updated 3 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆212Mar 20, 2026Updated 3 weeks ago
- k-mer based assembly evaluation☆341Jun 28, 2024Updated last year
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- ☆102Apr 22, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A local-haplotagging-based small and structural variant caller☆102Apr 1, 2026Updated last week
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆38Dec 30, 2025Updated 3 months ago
- Using Deep Learning to predict gene annotations☆280Mar 6, 2026Updated last month
- Per-base per-nucleotide depth analysis☆149Mar 16, 2026Updated 3 weeks ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆48Feb 23, 2021Updated 5 years ago
- ☆119Oct 10, 2025Updated 5 months ago
- ☆78Jun 12, 2020Updated 5 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆761Mar 18, 2025Updated last year
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆198Mar 8, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- SRF: Satellite Repeat Finder☆102Jan 8, 2024Updated 2 years ago
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆233Sep 6, 2024Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆242Feb 3, 2026Updated 2 months ago
- Constructing a pangenome gene graph☆205Aug 11, 2025Updated 7 months ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Align proteins to genomes with splicing and frameshift☆397Jan 5, 2026Updated 3 months ago
- Sequence-to-graph mapper and graph generator☆475Aug 11, 2025Updated 7 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆70Nov 24, 2025Updated 4 months ago
- Correcting errors in noisy long reads using variation graphs☆51Nov 17, 2022Updated 3 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆387Mar 11, 2026Updated 3 weeks ago
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆48Aug 20, 2025Updated 7 months ago
- haplotypic duplication identification tool☆279Oct 30, 2025Updated 5 months ago