DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
☆264Apr 7, 2026Updated 6 months ago
Alternatives and similar repositories for deepconsensus
Users that are interested in deepconsensus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- PEPPER-Margin-DeepVariant☆261Jan 12, 2024Updated 2 years ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆142Feb 14, 2025Updated last year
- Align subreads to ccs reads☆14Jun 11, 2025Updated last year
- Fast and accurate coordinate conversion between assemblies☆118Sep 21, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline to convert a haploid assembly into diploid☆113Jan 23, 2025Updated last year
- Long read / genome alignment software☆332Dec 16, 2025Updated 9 months ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆190Apr 12, 2024Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- Yet another k-mer analyzer☆178Dec 30, 2025Updated 9 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated 2 weeks ago
- k-mer based assembly evaluation☆354Jul 6, 2026Updated 3 months ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- ☆102Apr 22, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Per-base per-nucleotide depth analysis☆151May 9, 2026Updated 5 months ago
- ☆124Sep 29, 2026Updated last week
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Mar 8, 2022Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- ☆78Jun 12, 2020Updated 6 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆816May 31, 2026Updated 4 months ago
- Ploidy agnostic phasing pipeline and algorithm☆51Jan 3, 2024Updated 2 years ago
- SRF: Satellite Repeat Finder☆110Jan 8, 2024Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆250Sep 6, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆264Sep 16, 2026Updated 3 weeks ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Align proteins to genomes with splicing and frameshift☆423Jan 5, 2026Updated 9 months ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Sequence-to-graph mapper and graph generator☆491Aug 11, 2025Updated last year
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆40Dec 30, 2025Updated 9 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆70Nov 24, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Correcting errors in noisy long reads using variation graphs☆53Nov 17, 2022Updated 3 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆421Aug 25, 2026Updated last month
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆49Aug 20, 2025Updated last year
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆111Jun 25, 2026Updated 3 months ago
- haplotypic duplication identification tool☆296Oct 30, 2025Updated 11 months ago
- Toolkit for calling structural variants using short or long reads☆119Aug 21, 2026Updated last month