isugifNF / polishCLRLinks
A nextflow pipeline for polishing CLR assemblies
☆18Updated 3 years ago
Alternatives and similar repositories for polishCLR
Users that are interested in polishCLR are comparing it to the libraries listed below
Sorting:
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 11 months ago
- Improved long-read assembly by preserving contained reads☆30Updated last year
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 9 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Phasing reads with secondary alignments☆21Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆25Updated 2 weeks ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- The MafFilter genome alignment processor☆19Updated last month
- Consensus genome annotation using OMA☆31Updated 3 weeks ago
- ☆28Updated 6 months ago
- FastK based version of Merqury☆30Updated 3 weeks ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆38Updated 3 months ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 3 years ago
- Prefix-renaming FASTA records really fast.☆17Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Updated 5 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Updated 3 months ago