A nextflow pipeline for polishing CLR assemblies
☆18Feb 3, 2023Updated 3 years ago
Alternatives and similar repositories for polishCLR
Users that are interested in polishCLR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Updated this week
- Minimizer-based assembly scaffolding and mapping using long reads☆52Apr 1, 2026Updated 3 months ago
- Test sets and pipeline scripts for pan-genomic graph analysis☆17Jan 30, 2025Updated last year
- PECAT, a phased error correct and assembly tool☆66Dec 8, 2025Updated 6 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆44Apr 27, 2026Updated 2 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆75Feb 19, 2019Updated 7 years ago
- Align subreads to ccs reads☆14Jun 11, 2025Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆36Apr 20, 2026Updated 2 months ago
- ☆20Dec 13, 2023Updated 2 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆111Jul 23, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Linear-time de novo Long Read Assembler☆42Mar 19, 2026Updated 3 months ago
- Accurate contamination removal using locality-sensitive hashing☆14Jul 8, 2023Updated 2 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Jun 18, 2026Updated 2 weeks ago
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated 2 months ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 4 years ago
- A tool for evaluate long-read de novo assembly results☆51Aug 28, 2024Updated last year
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28May 10, 2020Updated 6 years ago
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆49Jun 7, 2023Updated 3 years ago
- Novo&Stitch is a genome assembly reconciliation tool based on optical map.☆10Oct 21, 2019Updated 6 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- ☆19Updated this week
- Automatic evaluation of HGTs☆32Jan 31, 2025Updated last year
- A tool for de novo clustering of long transcriptomic reads☆14Oct 2, 2022Updated 3 years ago
- Hagfish - assess an assembly through creative use of coverage plots☆36Aug 9, 2012Updated 13 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆69Dec 2, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Show pangenome graphs in an easy way☆59Aug 7, 2025Updated 10 months ago
- Complete Genome Assembly Toolkit☆37Jun 26, 2026Updated last week
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Dec 13, 2024Updated last year
- Extracting paths from assembly graphs☆24Jun 22, 2026Updated last week
- ☆49Mar 19, 2023Updated 3 years ago