A nextflow pipeline for polishing CLR assemblies
☆18Feb 3, 2023Updated 3 years ago
Alternatives and similar repositories for polishCLR
Users that are interested in polishCLR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Apr 10, 2026Updated last month
- Minimizer-based assembly scaffolding and mapping using long reads☆52Apr 1, 2026Updated last month
- Test sets and pipeline scripts for pan-genomic graph analysis☆17Jan 30, 2025Updated last year
- PECAT, a phased error correct and assembly tool☆65Dec 8, 2025Updated 5 months ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆43Apr 27, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 3 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆74Feb 19, 2019Updated 7 years ago
- Align subreads to ccs reads☆14Jun 11, 2025Updated 11 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆36Apr 20, 2026Updated last month
- ☆20Dec 13, 2023Updated 2 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆109Jul 23, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Linear-time de novo Long Read Assembler☆41Mar 19, 2026Updated 2 months ago
- Accurate contamination removal using locality-sensitive hashing☆14Jul 8, 2023Updated 2 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Jan 26, 2023Updated 3 years ago
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated last month
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 4 years ago
- A tool for evaluate long-read de novo assembly results☆50Aug 28, 2024Updated last year
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28May 10, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆48Jun 7, 2023Updated 2 years ago
- Novo&Stitch is a genome assembly reconciliation tool based on optical map.☆10Oct 21, 2019Updated 6 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- ☆18Apr 28, 2026Updated 3 weeks ago
- Automatic evaluation of HGTs☆31Jan 31, 2025Updated last year
- A tool for de novo clustering of long transcriptomic reads☆15Oct 2, 2022Updated 3 years ago
- Hagfish - assess an assembly through creative use of coverage plots☆36Aug 9, 2012Updated 13 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆68Dec 2, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Show pangenome graphs in an easy way☆59Aug 7, 2025Updated 9 months ago
- Laboratory Information Management System☆37Oct 30, 2020Updated 5 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Dec 13, 2024Updated last year
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated 2 years ago
- ☆49Mar 19, 2023Updated 3 years ago