PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
☆293Feb 4, 2025Updated last year
Alternatives and similar repositories for pbbioconda
Users that are interested in pbbioconda are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A minimap2 frontend for PacBio native data formats☆219Updated this week
- pbsv - PacBio structural variant (SV) calling and analysis tools☆167Feb 26, 2025Updated last year
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆126Mar 18, 2024Updated 2 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆237Jun 24, 2026Updated last week
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆117Sep 11, 2020Updated 5 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆784May 31, 2026Updated last month
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆279Sep 26, 2023Updated 2 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- A single molecule sequence assembler for genomes large and small.☆701Jun 18, 2026Updated 2 weeks ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Jun 14, 2020Updated 6 years ago
- Fast and accurately polish the genome generated by long reads.☆244Jan 9, 2025Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,204May 19, 2026Updated last month
- PacBio BAM toolkit☆52Feb 26, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- ☆78Jun 12, 2020Updated 6 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆529Sep 27, 2023Updated 2 years ago
- k-mer based assembly evaluation☆344May 21, 2026Updated last month
- ☆46Jun 21, 2020Updated 6 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Jun 8, 2026Updated 3 weeks ago
- Structural variation caller using third generation sequencing☆666Jun 24, 2026Updated last week
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆113Jun 6, 2021Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆40Mar 14, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆72Nov 12, 2020Updated 5 years ago
- Sequence-to-graph mapper and graph generator☆482Aug 11, 2025Updated 10 months ago
- Long read / genome alignment software☆328Dec 16, 2025Updated 6 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆401Apr 22, 2026Updated 2 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆184Mar 25, 2026Updated 3 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆941Apr 3, 2026Updated 3 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆183Apr 12, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆52Feb 3, 2021Updated 5 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆274Jun 20, 2026Updated 2 weeks ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 6 months ago
- Extensive de-novo TE Annotator☆455May 12, 2026Updated last month
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 5 years ago
- Long read aligner☆114May 26, 2023Updated 3 years ago