PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
☆295Feb 4, 2025Updated last year
Alternatives and similar repositories for pbbioconda
Users that are interested in pbbioconda are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A minimap2 frontend for PacBio native data formats☆221Jul 2, 2026Updated 3 weeks ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆168Jul 15, 2026Updated last week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆241Jun 24, 2026Updated last month
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆127Mar 18, 2024Updated 2 years ago
- Improved Phased Assembler☆29Mar 11, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Sep 11, 2020Updated 5 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆790May 31, 2026Updated last month
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆282Sep 26, 2023Updated 2 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- A single molecule sequence assembler for genomes large and small.☆703Jun 18, 2026Updated last month
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Jun 14, 2020Updated 6 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,221May 19, 2026Updated 2 months ago
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆78Jun 12, 2020Updated 6 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- ☆46Jun 21, 2020Updated 6 years ago
- PacBio BAM toolkit☆52Feb 26, 2025Updated last year
- k-mer based assembly evaluation☆351Jul 6, 2026Updated 2 weeks ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Jun 8, 2026Updated last month
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆40Mar 14, 2023Updated 3 years ago
- Structural variation caller using third generation sequencing☆673Updated this week
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆115Jun 6, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆72Nov 12, 2020Updated 5 years ago
- Long read / genome alignment software☆329Dec 16, 2025Updated 7 months ago
- Sequence-to-graph mapper and graph generator☆483Aug 11, 2025Updated 11 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆404Apr 22, 2026Updated 3 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆185Mar 25, 2026Updated 3 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆185Apr 12, 2023Updated 3 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆945Apr 3, 2026Updated 3 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆52Feb 3, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆275Updated this week
- ☆11Mar 4, 2025Updated last year
- Extensive de-novo TE Annotator☆464Jul 16, 2026Updated last week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 5 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago