zheminzhou / PEPPAN
Phylogeny Enhanded Prediction of PAN-genome
☆39Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for PEPPAN
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last month
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- Gene-flank analysis tool☆26Updated 6 months ago
- IslandPath standalone software☆31Updated last year
- whole genome MLST analysis☆38Updated 5 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆24Updated 2 years ago
- ☆45Updated 6 months ago
- ☆17Updated 2 months ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated this week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated last year
- Automated strain separation of low-complexity metagenomes☆50Updated 2 years ago
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- Pipeline for metagenome and metatranscriptome joint assembly☆18Updated last year
- Discover and annotate the virome☆31Updated 3 weeks ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 6 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆24Updated last week
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 9 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆42Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆68Updated last year
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- ☆33Updated 2 years ago