zheminzhou / PEPPAN
Phylogeny Enhanded Prediction of PAN-genome
☆40Updated 4 years ago
Alternatives and similar repositories for PEPPAN:
Users that are interested in PEPPAN are comparing it to the libraries listed below
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- whole genome MLST analysis☆41Updated last week
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- Discover and annotate the virome☆39Updated 5 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- ☆20Updated 6 months ago
- Gene-flank analysis tool☆27Updated 3 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated last month
- IslandPath standalone software☆31Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Extract metadata from biosamples in NCBI☆13Updated 3 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- ☆24Updated 6 years ago
- ☆36Updated 2 years ago
- ☆52Updated 3 years ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆20Updated 2 years ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Calculate assocations between genes and traits☆23Updated last week
- Gene Absence Presence Identification tool.☆26Updated last year