More scalable dereplication for metagenome assembled genomes
☆78Dec 17, 2025Updated 2 months ago
Alternatives and similar repositories for galah
Users that are interested in galah are comparing it to the libraries listed below
Sorting:
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆236Oct 12, 2025Updated 4 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆251Mar 20, 2025Updated 11 months ago
- Read alignment statistics for metagenomics☆390Jan 16, 2026Updated last month
- SemiBin: metagenomics binning with self-supervised deep learning☆155Feb 19, 2026Updated 2 weeks ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 10 months ago
- The binning tool with dynamic contrastive learning and deep language model☆21Nov 14, 2025Updated 3 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆181Feb 26, 2026Updated last week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 5 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 5 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆297Feb 3, 2026Updated last month
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆71Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆178Jan 7, 2026Updated last month
- Unified Human Gut Virome Catalog☆41Nov 10, 2025Updated 3 months ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated last month
- MAGScoT - a MAG scoring and refinement tool☆43Oct 10, 2024Updated last year
- k-mers and the like☆22Updated this week
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 3 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- ☆63Feb 27, 2024Updated 2 years ago
- PHANOTATE: a gene caller for phages.☆84Dec 2, 2024Updated last year
- Variational autoencoder for metagenomic binning☆317Feb 23, 2026Updated last week
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆42Sep 3, 2024Updated last year
- Bifrost graph gene caller.☆98Jan 20, 2026Updated last month
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆15May 13, 2025Updated 9 months ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Fast sequence distance estimates☆26Jan 29, 2026Updated last month
- Precise host read removal☆117Sep 4, 2025Updated 6 months ago
- Bioinformatics program inStrain☆181May 9, 2025Updated 9 months ago
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- ✨🧬 Refined binning of metagenomic contigs using assembly graphs☆97Mar 6, 2025Updated last year
- Discovery of conserved gene clusters in multiple genomes☆124Jan 16, 2026Updated last month
- Rapid comparison and dereplication of genomes☆327Nov 10, 2025Updated 3 months ago
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆167Feb 11, 2026Updated 3 weeks ago
- AMBER: Assessment of Metagenome BinnERs☆33Jan 6, 2026Updated 2 months ago