wwood / galahLinks
More scalable dereplication for metagenome assembled genomes
☆75Updated 3 weeks ago
Alternatives and similar repositories for galah
Users that are interested in galah are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆53Updated last year
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 9 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- MAGScoT - a MAG scoring and refinement tool☆41Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Updated last week
- Automatic eukaryotic taxonomic classification☆29Updated 7 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆44Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- ☆62Updated last year
- A toolbox for improving metagenome-assembled genomes.☆62Updated 4 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Unified Human Gut Virome Catalog☆40Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated this week
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Updated 2 months ago
- Prophage Activity Estimator☆29Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated this week
- Discover and annotate the virome☆58Updated 2 months ago
- Strain resolver for metagenomics☆80Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆57Updated 7 months ago
- ☆20Updated last year
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆95Updated 7 months ago
- ☆33Updated 2 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago