More scalable dereplication for metagenome assembled genomes
☆83May 16, 2026Updated last month
Alternatives and similar repositories for galah
Users that are interested in galah are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆253May 13, 2026Updated last month
- The binning tool with dynamic contrastive learning and deep language model☆23Nov 14, 2025Updated 7 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆76Jun 4, 2026Updated last week
- SemiBin: metagenomics binning with self-supervised deep learning☆164Jun 7, 2026Updated last week
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆189Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Read alignment statistics for metagenomics☆399Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆267Mar 20, 2025Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆57May 24, 2026Updated 3 weeks ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- MAGScoT - a MAG scoring and refinement tool☆44Apr 8, 2026Updated 2 months ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 8 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆307Feb 3, 2026Updated 4 months ago
- Variational autoencoder for metagenomic binning☆328Apr 27, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆23Nov 25, 2025Updated 6 months ago
- k-mers and the like☆22May 26, 2026Updated 3 weeks ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 2 months ago
- ☆64Feb 27, 2024Updated 2 years ago
- Discovery of conserved gene clusters in multiple genomes☆132Jan 16, 2026Updated 5 months ago
- Unified Human Gut Virome Catalog☆47May 29, 2026Updated 2 weeks ago
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Mar 7, 2024Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆74Dec 1, 2025Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- map Illumina metagenomes to genomes!☆39Jan 22, 2026Updated 4 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- AMBER: Assessment of Metagenome BinnERs☆33Jun 5, 2026Updated last week
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Jun 7, 2026Updated last week
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆44Sep 3, 2024Updated last year
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆90May 11, 2026Updated last month
- Toolbox for comparative genomics of MAGs☆91Apr 28, 2026Updated last month
- Precise host read removal☆124Apr 13, 2026Updated 2 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆67Apr 10, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆472May 28, 2026Updated 2 weeks ago
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆11Aug 26, 2022Updated 3 years ago
- Phage-Host Interaction Search Tool☆31Jul 8, 2024Updated last year
- Bioinformatics program inStrain☆188Mar 12, 2026Updated 3 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆606May 20, 2026Updated 3 weeks ago
- Recombination-free trees☆70Apr 26, 2026Updated last month
- A hybrid assembly and MAG recovery pipeline (and more!)☆107Jun 5, 2026Updated last week