⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
☆60May 25, 2026Updated 2 weeks ago
Alternatives and similar repositories for fulgor
Users that are interested in fulgor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- A SIMD-accelerated library to compute random minimizers☆44Apr 6, 2026Updated 2 months ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- Compacted and colored de Bruijn graph construction and querying☆97Updated this week
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆41Mar 9, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 4 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 6 months ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆102May 6, 2026Updated last month
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated 10 months ago
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆38Apr 1, 2026Updated 2 months ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆55Mar 13, 2025Updated last year
- k-mers and the like☆22May 26, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 3 weeks ago
- BWT construction and search☆127Jan 14, 2026Updated 4 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29May 31, 2026Updated last week
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated last year
- Building the compacted de Bruijn graph efficiently from references or reads.☆93Feb 26, 2026Updated 3 months ago
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated last month
- Fast sequence distance estimates☆28May 29, 2026Updated last week
- Assembled Genomes Compressor☆181May 6, 2026Updated last month
- Mumemto: multi-MUM and MEM finding across pangenomes☆132Apr 17, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20May 25, 2026Updated 2 weeks ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆43May 21, 2026Updated 2 weeks ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆89Jan 25, 2024Updated 2 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Jun 2, 2026Updated last week
- Plasmid analysis using rearrangement distances☆55May 28, 2026Updated last week
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated last year
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated last month
- Rust bindings to minimap2 library☆112May 3, 2026Updated last month
- A new high-resolution long-read metagenome assembler for even noisy reads☆152Apr 5, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆220Updated this week
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21May 31, 2026Updated last week
- Genomewide Epistasis Analysis on Bacteria☆15May 13, 2025Updated last year
- ☆20Aug 18, 2020Updated 5 years ago
- Fast approximate string searching☆139Updated this week
- mGEMS Genomic epidemiology with mixed samples☆15Sep 4, 2024Updated last year
- ☆21Dec 26, 2025Updated 5 months ago