jermp / fulgor
Fulgor is a fast and space-efficient colored de Bruijn graph index.
☆49Updated 3 weeks ago
Alternatives and similar repositories for fulgor:
Users that are interested in fulgor are comparing it to the libraries listed below
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- ☆17Updated last year
- Differential k-mer analysis☆34Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆20Updated 4 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆24Updated 11 months ago
- Fast and exact gap-affine partial order alignment☆49Updated 3 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆44Updated 5 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- Efficient, parallel compression for terabyte-scale data☆40Updated 2 months ago
- Iterate over minimizers of a DNA sequence☆28Updated 8 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆23Updated 2 weeks ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 10 months ago
- Index kmtricks bf matrices☆43Updated 3 months ago
- Benchmarking pairwise aligners☆36Updated last month
- mGEMS Genomic epidemiology with mixed samples☆16Updated 6 months ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 7 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated 10 months ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Updated last week
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆22Updated this week
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 8 months ago
- Pan-Genomic Matching Statistics☆52Updated 11 months ago
- ☆28Updated last year
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 weeks ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆76Updated this week
- ☆21Updated 5 months ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆63Updated 9 months ago
- Remove human reads from a sequencing run☆38Updated 5 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 3 weeks ago
- Wavefront alignment algorithm (WFA) in Golang☆30Updated 4 months ago