β‘οΈ π§¬ Fulgor is a fast and space-efficient colored de Bruijn graph index.
β60Aug 13, 2026Updated 2 weeks ago
Alternatives and similar repositories for fulgor
Users that are interested in fulgor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimal distance lower bound k-mer sampling.β12Jun 19, 2024Updated 2 years ago
- A SIMD-accelerated library to compute random minimizersβ46Updated this week
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)β24Mar 13, 2025Updated last year
- Compacted and colored de Bruijn graph construction and queryingβ100Updated this week
- Fast, Cache-Efficient, and Scalable Queries on Pangenomesβ46Mar 9, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLogβ22Aug 19, 2026Updated last week
- A new high-resolution long-read metagenome assembler for even noisy readsβ166Jul 3, 2026Updated last month
- π 𧬠SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.β108Updated this week
- A minimal copy fastq and fasta reader built for parallel support and paired end processingβ48Aug 19, 2026Updated last week
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transformβ25Nov 20, 2025Updated 9 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.β44Nov 18, 2023Updated 2 years ago
- Implementation of eBWT using Prefix-free parse (PFP)β14Jul 14, 2025Updated last year
- Iterate over minimizers of a DNA sequenceβ33Jul 12, 2024Updated 2 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graphβ57Mar 13, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- k-mers and the likeβ23Aug 9, 2026Updated 3 weeks ago
- A small, auxiliary index to massively improve parallel fastq parsingβ32Mar 6, 2026Updated 5 months ago
- A Rust library providing fully dynamic sets of k-mers with high localityβ47May 13, 2026Updated 3 months ago
- BWT construction and searchβ130Jan 14, 2026Updated 7 months ago
- β17Aug 8, 2025Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.β29Jul 12, 2026Updated last month
- De Bruijn graph representation in low memoryβ36Jul 6, 2024Updated 2 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.β97Aug 16, 2026Updated 2 weeks ago
- Ultra-rapid detection of viral variants directly from sequencing dataβ47Aug 23, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- KmerCamelπ« provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.β20Jul 24, 2026Updated last month
- kmer-counter based on kache-hashβ16Updated this week
- GBZ file format for pangenome graphsβ46Updated this week
- sunburst plots for taxonomy - working to update Kronaβ46Sep 22, 2025Updated 11 months ago
- An extensible and performant aligner and read mapperβ103Jul 27, 2026Updated last month
- Assembled Genomes Compressorβ188Jul 22, 2026Updated last month
- syncmer graphs, and perhaps other sorts of sequence graphsβ44Jul 31, 2026Updated 3 weeks ago
- Fast sequence distance estimatesβ31Updated this week
- Genomewide Epistasis Analysis on Bacteriaβ15Aug 7, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)β89Jan 25, 2024Updated 2 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.β26Aug 10, 2026Updated 2 weeks ago
- Optimal sequence-to-graph alignment with recombinationsβ41Apr 28, 2026Updated 4 months ago
- Validation of sycnmers compared to minimizersβ11May 10, 2025Updated last year
- Efficient, parallel compression for terabyte-scale dataβ64Feb 25, 2026Updated 6 months ago
- Mumemto: multi-MUM and MEM finding across pangenomesβ136Jul 29, 2026Updated last month
- Rust bindings to minimap2 libraryβ113May 3, 2026Updated 3 months ago