β‘οΈ π§¬ Fulgor is a fast and space-efficient colored de Bruijn graph index.
β59Jul 14, 2026Updated last week
Alternatives and similar repositories for fulgor
Users that are interested in fulgor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimal distance lower bound k-mer sampling.β12Jun 19, 2024Updated 2 years ago
- A SIMD-accelerated library to compute random minimizersβ46Jul 7, 2026Updated last week
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)β24Mar 13, 2025Updated last year
- Compacted and colored de Bruijn graph construction and queryingβ98Jul 1, 2026Updated 2 weeks ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomesβ45Mar 9, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLogβ22Jan 22, 2026Updated 5 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transformβ25Nov 20, 2025Updated 8 months ago
- A new high-resolution long-read metagenome assembler for even noisy readsβ157Jul 3, 2026Updated 2 weeks ago
- π 𧬠SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.β107May 6, 2026Updated 2 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processingβ45Updated this week
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.β44Nov 18, 2023Updated 2 years ago
- Implementation of eBWT using Prefix-free parse (PFP)β14Jul 14, 2025Updated last year
- Iterate over minimizers of a DNA sequenceβ33Jul 12, 2024Updated 2 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graphβ57Mar 13, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A small, auxiliary index to massively improve parallel fastq parsingβ32Mar 6, 2026Updated 4 months ago
- k-mers and the likeβ23Updated this week
- A Rust library providing fully dynamic sets of k-mers with high localityβ47May 13, 2026Updated 2 months ago
- BWT construction and searchβ129Jan 14, 2026Updated 6 months ago
- β17Aug 8, 2025Updated 11 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.β29Jul 12, 2026Updated last week
- De Bruijn graph representation in low memoryβ36Jul 6, 2024Updated 2 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.β95Updated this week
- Ultra-rapid detection of viral variants directly from sequencing dataβ46Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer β’ AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- KmerCamelπ« provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.β20May 25, 2026Updated last month
- kmer-counter based on kache-hashβ16Updated this week
- GBZ file format for pangenome graphs