⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
☆60Sep 3, 2026Updated 2 weeks ago
Alternatives and similar repositories for fulgor
Users that are interested in fulgor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- A SIMD-accelerated library to compute random minimizers☆47Aug 26, 2026Updated 3 weeks ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- Compacted and colored de Bruijn graph construction and querying☆101Updated this week
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆46Mar 9, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last month
- A new high-resolution long-read metagenome assembler for even noisy reads☆170Sep 9, 2026Updated last week
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆109Sep 3, 2026Updated 2 weeks ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆50Updated this week
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 10 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated last year
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆58Mar 13, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- k-mers and the like☆23Aug 30, 2026Updated 3 weeks ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 6 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 4 months ago
- BWT construction and search☆131Aug 30, 2026Updated 3 weeks ago
- ☆17Aug 8, 2025Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 2 months ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated 2 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆98Sep 8, 2026Updated last week
- Ultra-rapid detection of viral variants directly from sequencing data☆47Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Sep 9, 2026Updated last week
- GBZ file format for pangenome graphs☆46Updated this week
- sunburst plots for taxonomy - working to update Krona☆48Sep 22, 2025Updated 11 months ago
- An extensible and performant aligner and read mapper☆105Updated this week
- Assembled Genomes Compressor☆187Jul 22, 2026Updated last month
- syncmer graphs, and perhaps other sorts of sequence graphs☆48Aug 28, 2026Updated 3 weeks ago
- kmer-counter based on kache-hash☆19Updated this week
- Genomewide Epistasis Analysis on Bacteria☆15Aug 7, 2026Updated last month
- Fast sequence distance estimates☆34Aug 24, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆89Jan 25, 2024Updated 2 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Sep 7, 2026Updated last week
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 4 months ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated last year
- Efficient, parallel compression for terabyte-scale data☆64Feb 25, 2026Updated 6 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆137Jul 29, 2026Updated last month
- Rust bindings to minimap2 library☆113Updated this week