β‘οΈ π§¬ Fulgor is a fast and space-efficient colored de Bruijn graph index.
β59Jun 14, 2026Updated 2 weeks ago
Alternatives and similar repositories for fulgor
Users that are interested in fulgor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimal distance lower bound k-mer sampling.β12Jun 19, 2024Updated 2 years ago
- A SIMD-accelerated library to compute random minimizersβ45Apr 6, 2026Updated 2 months ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)β24Mar 13, 2025Updated last year
- Compacted and colored de Bruijn graph construction and queryingβ98Jun 11, 2026Updated 2 weeks ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomesβ44Mar 9, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI β’ AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLogβ20Jan 22, 2026Updated 5 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transformβ25Nov 20, 2025Updated 7 months ago
- π 𧬠SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.β103May 6, 2026Updated last month
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.β44Nov 18, 2023Updated 2 years ago
- Implementation of eBWT using Prefix-free parse (PFP)β14Jul 14, 2025Updated 11 months ago
- Iterate over minimizers of a DNA sequenceβ33Jul 12, 2024Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphsβ41Jun 15, 2026Updated 2 weeks ago
- Space-efficient pseudoalignment with a colored de Bruijn graphβ56Mar 13, 2025Updated last year
- k-mers and the likeβ22Jun 22, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A Rust library providing fully dynamic sets of k-mers with high localityβ47May 13, 2026Updated last month
- BWT construction and searchβ129Jan 14, 2026Updated 5 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.β29Updated this week
- De Bruijn graph representation in low memoryβ36Jul 6, 2024Updated last year
- Building the compacted de Bruijn graph efficiently from references or reads.β94Feb 26, 2026Updated 4 months ago
- GBZ file format for pangenome graphsβ46Apr 18, 2026Updated 2 months ago
- Fast sequence distance estimatesβ30Jun 17, 2026Updated last week
- Assembled Genomes Compressorβ183May 6, 2026Updated last month
- Mumemto: multi-MUM and MEM finding across pangenomesβ132Apr 17, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- KmerCamelπ« provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.β20May 25, 2026Updated last month
- A minimal copy fastq and fasta reader built for parallel support and paired end processingβ43May 21, 2026Updated last month
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)β89Jan 25, 2024Updated 2 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.β26Jun 22, 2026Updated last week
- Plasmid analysis using rearrangement distancesβ56May 28, 2026Updated last month
- Validation of sycnmers compared to minimizersβ11May 10, 2025Updated last year
- Optimal sequence-to-graph alignment with recombinationsβ41Apr 28, 2026Updated 2 months ago
- A new high-resolution long-read metagenome assembler for even noisy readsβ155Jun 11, 2026Updated 2 weeks ago
- Rust bindings to minimap2 libraryβ113May 3, 2026Updated last month
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- LexicMap: efficient sequence alignment against millions of prokaryotic genomesβ221Updated this week
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.β21May 31, 2026Updated 3 weeks ago
- Genomewide Epistasis Analysis on Bacteriaβ15May 13, 2025Updated last year
- β20Aug 18, 2020Updated 5 years ago
- Fast approximate string searchingβ153Jun 20, 2026Updated last week
- mGEMS Genomic epidemiology with mixed samplesβ16Sep 4, 2024Updated last year
- β21Dec 26, 2025Updated 6 months ago