jermp / fulgor

Related projects ⓘ

Alternatives and complementary repositories for fulgor

• Kmer-File-Format / kff-tools
  ☆17Updated last year
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆31Updated 2 years ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆34Updated 8 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆40Updated last week
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 5 months ago
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆43Updated last month
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆22Updated this week
• maxrossi91 / moni
  MONI: A Pangenomic Index for Finding MEMs
  ☆37Updated last month
• rchikhi / 2022-pangenome-graphs-intro
  ☆21Updated last month
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆48Updated 7 months ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆51Updated 2 years ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 7 months ago
• fawaz-dabbaghieh / bubble_gun
  ☆40Updated this week
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆50Updated last month
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• mourisl / centrifuger
  Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
  ☆49Updated last month
• tlemane / kmdiff
  Differential k-mer analysis
  ☆33Updated 9 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆26Updated 3 months ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆35Updated last year
• PROBIC / mGEMS
  mGEMS Genomic epidemiology with mixed samples
  ☆16Updated 2 months ago
• karel-brinda / Phylign
  Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
  ☆25Updated 6 months ago
• kcleal / pywfa
  Python wrapper for wavefront alignment using WFA2-lib
  ☆35Updated 6 months ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆48Updated 3 years ago
• VGP / vgp-tools
  ☆28Updated last year
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆30Updated last week
• ZekunYin / RabbitMash
  RabbitMash: an efficient highly optimized implementation of Mash.
  ☆21Updated last year
• tlemane / kmindex
  Index kmtricks bf matrices
  ☆41Updated 4 months ago
• dnbaker / dashing2
  Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
  ☆62Updated 4 months ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 4 years ago
• maickrau / MBG
  ☆57Updated this week