pollardlab / MIDAS
Metagenomic Intra-Species Diversity Analysis (MIDAS)
☆37Updated 6 months ago
Alternatives and similar repositories for MIDAS:
Users that are interested in MIDAS are comparing it to the libraries listed below
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- Microbial agile accurate SNP Typer☆29Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated last month
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Improvement of metagenome-assembled genomes☆50Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆20Updated 2 years ago
- Bacterial GWAS analysis☆37Updated last week
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 5 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆23Updated last week
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆14Updated 2 years ago
- Assessing and Improving the quality of metagenomic assemblies☆28Updated 3 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- OPAL: Open-community Profiling Assessment tooL☆28Updated 2 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆19Updated last year
- ☆16Updated 4 years ago
- ☆45Updated last year
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- Strain Resolution ON Graphs☆47Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 8 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆33Updated 2 years ago
- ☆41Updated 4 years ago
- MAGScoT - a MAG scoring and refinement tool☆32Updated 5 months ago
- A functional profiler for metagenomes using FracMinHash☆16Updated last month