wwood / singlemLinks
Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes
☆149Updated this week
Alternatives and similar repositories for singlem
Users that are interested in singlem are comparing it to the libraries listed below
Sorting:
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆131Updated 2 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 2 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆153Updated last week
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆202Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆122Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆233Updated 2 weeks ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆152Updated 3 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆96Updated 3 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆217Updated 3 months ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- DAS Tool☆154Updated last year
- Bioinformatics program inStrain☆174Updated 2 months ago
- ☆127Updated this week
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆76Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆79Updated 10 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆72Updated last year
- BSR-Based Allele Calling Algorithm☆148Updated 3 weeks ago
- Making whole bacterial genome sequencing data analysis easy☆108Updated 2 months ago
- fast phage annotation program☆168Updated 3 weeks ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆137Updated last week
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆136Updated last year
- Reorients assembled microbial sequences☆121Updated 3 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- DDBJ Fast Annotation and Submission Tool☆79Updated 2 months ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆101Updated last year
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆74Updated 6 months ago
- Virus Identification By iteRative ANnoTation☆171Updated last year
- SKESA assembler☆120Updated 9 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆47Updated 3 years ago
- a short-read polishing tool for long-read assemblies☆172Updated last year