bede / hostile
Precise host read removal
☆90Updated 3 months ago
Alternatives and similar repositories for hostile:
Users that are interested in hostile are comparing it to the libraries listed below
- Reorients assembled microbial sequences☆114Updated 2 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆106Updated this week
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆60Updated 2 months ago
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- ☆80Updated last year
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Recombination-free trees☆57Updated last year
- Split Kmer Analysis☆62Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 10 months ago
- IS mapping software☆53Updated 3 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆46Updated last month
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆97Updated this week
- A pipeline for running AMRfinderPlus and collating results into functional classes☆75Updated 7 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆55Updated 2 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated 3 weeks ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆59Updated 3 weeks ago
- Split k-mer analysis – version 2☆75Updated last month
- BEAV: Bacterial Element Annotation reVamped☆61Updated 4 months ago
- PHANOTATE: a tool to annotate phage genomes.☆72Updated 3 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆44Updated last month
- ☆67Updated 2 weeks ago
- Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each col…☆22Updated 7 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 3 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆62Updated 6 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆73Updated last year