bede / hostile
Precise host read removal
☆94Updated 3 weeks ago
Alternatives and similar repositories for hostile:
Users that are interested in hostile are comparing it to the libraries listed below
- Reorients assembled microbial sequences☆116Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆62Updated 3 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 5 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆47Updated 3 months ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 2 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆57Updated 3 weeks ago
- Recombination-free trees☆58Updated last month
- Split Kmer Analysis☆63Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Bifrost graph gene caller.☆93Updated 7 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆78Updated 8 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆73Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated last week
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆79Updated last week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 6 months ago
- Bacterial GWAS analysis☆40Updated 2 weeks ago
- ☆82Updated last year
- BEAV: Bacterial Element Annotation reVamped☆65Updated 6 months ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆37Updated last month
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 10 months ago
- Split k-mer analysis – version 2☆83Updated 2 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆46Updated last month
- Tool to estimate genome quality of microbial eukaryotes☆37Updated 3 months ago
- IS mapping software☆54Updated 3 years ago