bede / hostileLinks
Precise host read removal
☆108Updated 3 months ago
Alternatives and similar repositories for hostile
Users that are interested in hostile are comparing it to the libraries listed below
Sorting:
- Reorients assembled microbial sequences☆130Updated 3 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆76Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 9 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆51Updated last week
- Prediction of prophages from bacterial genomes☆82Updated 5 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆81Updated 2 months ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Split k-mer analysis – version 2☆101Updated last month
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆54Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- IS mapping software☆57Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 7 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated last month
- Split Kmer Analysis☆65Updated 3 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆90Updated last week
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated last month
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- ☆84Updated 2 years ago
- ☆80Updated 2 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated 2 weeks ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- SeqSero2☆39Updated 2 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆76Updated 7 months ago
- Recombination-free trees☆62Updated 3 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆94Updated 6 months ago