Precise host read removal
☆127Apr 13, 2026Updated 3 months ago
Alternatives and similar repositories for hostile
Users that are interested in hostile are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆259May 13, 2026Updated 2 months ago
- Fast DNA search and [host] depletion using minimizers☆117Updated this week
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated 3 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆314Feb 3, 2026Updated 5 months ago
- ☆33Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Discover and annotate the virome☆64Jun 10, 2026Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆61May 24, 2026Updated last month
- Remove human reads from a sequencing run☆49Jun 29, 2026Updated 3 weeks ago
- Plasmid analysis using rearrangement distances☆56Updated this week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated last year
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆55Jun 10, 2026Updated last month
- Bifrost graph gene caller.☆98Jun 18, 2026Updated last month
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆218Apr 24, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jun 24, 2026Updated 3 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆234Updated this week
- geNomad: Identification of mobile genetic elements☆323Mar 29, 2026Updated 3 months ago
- Randomly subsample sequencing reads or alignments☆271Updated this week
- Follow up to Grace Blackwell's 661k dataset, for 2023☆147Jun 10, 2026Updated last month
- Bacterial GWAS analysis☆57Jun 12, 2026Updated last month
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆151Jul 4, 2026Updated 2 weeks ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆180Apr 6, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆37Apr 26, 2026Updated 2 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆157Jul 3, 2026Updated 2 weeks ago
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 2 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆75Mar 14, 2026Updated 4 months ago
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆55Jul 24, 2025Updated 11 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆663Jul 10, 2026Updated last week
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Jan 23, 2026Updated 5 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆109Jul 10, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Fast pairwise transmission inference from single genome and/or metagenomic data☆38Updated this week
- Calculate confidence scores from Kraken2 output☆25Feb 18, 2024Updated 2 years ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 9 months ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆180Apr 22, 2026Updated 2 months ago
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated last month
- MAGScoT - a MAG scoring and refinement tool☆48Apr 8, 2026Updated 3 months ago
- Split k-mer analysis – version 2☆105Jul 9, 2026Updated last week