dib-lab / genome-grist
map Illumina metagenomes to genomes!
☆38Updated last week
Alternatives and similar repositories for genome-grist:
Users that are interested in genome-grist are comparing it to the libraries listed below
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆56Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated 2 weeks ago
- Build a map of genes present across a set of microbial genomes☆14Updated last week
- multiPhATE with comparative genomics☆18Updated 3 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 5 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 8 months ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆11Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- A functional profiler for metagenomes using FracMinHash☆16Updated last month
- Whole genome core alignments from multiple draft genomes☆12Updated 8 years ago
- ☆45Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆63Updated 2 weeks ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆43Updated 6 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated 2 weeks ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆17Updated 4 months ago
- Tools for analyzing trees☆14Updated last year
- Strain Resolution ON Graphs☆47Updated last year
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- A Hierarchical Approach to Pangenomics Inference☆11Updated 11 months ago
- ☆22Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆38Updated 4 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆14Updated 6 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- software to identify primers that can distinguish genomes☆21Updated 2 months ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated 3 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago