Non-redundant pangenome assemblies from multiple genomes or bins
☆15Aug 6, 2026Updated 3 weeks ago
Alternatives and similar repositories for SuperPang
Users that are interested in SuperPang are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MetagenOmic read Re-Assigner and abundance quantifier☆21Jun 24, 2026Updated 2 months ago
- A lightweight kmer-based algorithm for designing diagnostic CRISPR assays using genome data.☆13Aug 19, 2024Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- ☆16May 26, 2022Updated 4 years ago
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆129Aug 19, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- plane sweep filtering genome alignments☆24Jul 25, 2026Updated last month
- Space-efficient pseudoalignment with a colored de Bruijn graph☆57Mar 13, 2025Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated last year
- ☆15Dec 3, 2024Updated last year
- ☆21Dec 26, 2025Updated 8 months ago
- A novel method for sequence similarity estimation☆28Mar 23, 2024Updated 2 years ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Build a partitioned pangenome graph from microbial genomes☆313Updated this week
- Rapid comparison and dereplication of genomes☆354Jul 16, 2026Updated last month
- Population analysis PIPEline 🛠🧬☆26Mar 2, 2026Updated 5 months ago
- More scalable dereplication for metagenome assembled genomes☆87Aug 3, 2026Updated 3 weeks ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆85Sep 8, 2025Updated 11 months ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- linearize and simplify variation graphs using blocked partial order alignment☆64Aug 21, 2026Updated last week
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆74May 20, 2022Updated 4 years ago
- All The Bacteria CLI — query 3.2M bacterial genomes (AMR, MLST, assemblies, metadata) from the terminal☆34Aug 5, 2026Updated 3 weeks ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- Visualization tool for (meta)genome assembly graphs☆50Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆238Aug 14, 2026Updated 2 weeks ago
- Split Kmer Analysis☆67May 26, 2022Updated 4 years ago
- Reference-agnostic Representation and Visualization of Pan-genomes☆19Sep 16, 2021Updated 4 years ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Index kmtricks bf matrices☆49Aug 25, 2026Updated last week
- ☆16Jun 18, 2020Updated 6 years ago
- modular k-mer count matrix and Bloom filter construction for large read collections☆89Jun 26, 2026Updated 2 months ago
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆27Nov 3, 2025Updated 9 months ago
- Fast and scalable nanopore adaptive sampling☆37Jun 6, 2023Updated 3 years ago
- ☆14Jan 20, 2016Updated 10 years ago
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 5 years ago