fpusan / SuperPang
Non-redundant pangenome assemblies from multiple genomes or bins
☆13Updated last week
Alternatives and similar repositories for SuperPang:
Users that are interested in SuperPang are comparing it to the libraries listed below
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 3 weeks ago
- Code to create a PRG from a Multiple Sequence Alignment file☆23Updated 10 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆22Updated this week
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 3 weeks ago
- software to identify primers that can distinguish genomes☆21Updated 3 weeks ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 10 months ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated 11 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated this week
- Plasmid analysis using rearrangement distances☆31Updated 3 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Strain-level taxonomic classification of metagenomic data using pangenome graphs☆23Updated 3 months ago
- Genome size estimation from long read overlaps☆48Updated 2 months ago
- k-mers and the like☆21Updated this week
- ☆10Updated 3 weeks ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 3 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated this week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- De novo VIral Genome Annotator☆21Updated 5 months ago
- TAXnomic Profile Aggregation and STAndardisation☆35Updated 3 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated this week
- ☆17Updated 8 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆27Updated last month
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆20Updated 7 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆21Updated 2 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Manipulate and generate figures for trees in Newick format☆21Updated 3 weeks ago
- Find Unique genomic Regions☆29Updated last month