esteinig / scrubbyLinks
Host depletion optimised for clinical metagenomic sequencing applications
☆16Updated last year
Alternatives and similar repositories for scrubby
Users that are interested in scrubby are comparing it to the libraries listed below
Sorting:
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Updated last year
- k-mers and the like☆22Updated last week
- Shared k-mer content between two genomes☆18Updated 2 years ago
- A taxonomic classifier for shotgun metagenomics reads☆11Updated 8 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Updated last year
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆19Updated this week
- Rust library for processing sequencing reads.☆25Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- Fast sequence distance estimates☆24Updated last week
- Iterate over minimizers of a DNA sequence☆31Updated last year
- A FASTA/FASTQ format parser library☆20Updated last year
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Updated last year
- ☆18Updated 10 months ago
- Minimum plain text representation of kmer sets☆16Updated 10 months ago
- Next Index to Query Kmer Intersection☆17Updated 2 years ago
- Basecalling configuration prediction through FASTQ files☆32Updated 2 weeks ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 4 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆34Updated 2 months ago
- ☆12Updated 6 months ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 3 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Just another minhash implementation.☆12Updated 3 months ago
- ☆13Updated last month
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 10 months ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 7 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year