Host depletion optimised for clinical metagenomic sequencing applications
☆18May 18, 2026Updated 3 weeks ago
Alternatives and similar repositories for scrubby
Users that are interested in scrubby are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 4 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 6 months ago
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 4 months ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 7 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 4 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆31Updated this week
- µbinfie blog☆19Jul 21, 2025Updated 10 months ago
- k-mers and the like☆22May 26, 2026Updated 2 weeks ago
- Split k-mer analysis – version 2☆104Apr 9, 2026Updated 2 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Extract subsets of ONT (Nanopore) reads based on time☆24Sep 12, 2024Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- Generate mutated sequence files from a reference genome.☆11Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 9 months ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- Calculate confidence scores from Kraken2 output☆25Feb 18, 2024Updated 2 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆37Apr 26, 2026Updated last month
- Overview of our data for microbial genomic benchmarking☆40Updated this week
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 4 months ago
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆30Updated this week
- A pipeline for bioinformatics analysis of bacterial genomes☆34Apr 26, 2026Updated last month
- ☆11Mar 10, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆28May 7, 2026Updated last month
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆75Updated this week
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated 11 months ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Updated this week
- Bifrost graph gene caller.☆98Apr 12, 2026Updated 2 months ago
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated last month
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated last year
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 10 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Jul 19, 2023Updated 2 years ago
- Rust bindings to minimap2 library☆112May 3, 2026Updated last month
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21May 31, 2026Updated 2 weeks ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 3 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago