✨🧬 Refined binning of metagenomic contigs using assembly graphs
☆97Mar 6, 2025Updated last year
Alternatives and similar repositories for GraphBin
Users that are interested in GraphBin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated last year
- LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.☆33Aug 10, 2026Updated 2 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆67Aug 28, 2026Updated 2 months ago
- How many distinct k-mers are there in a sequence?☆11Feb 4, 2026Updated 8 months ago
- Variational autoencoder for metagenomic binning☆335Apr 27, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Sep 7, 2026Updated last month
- SemiBin: metagenomics binning with self-supervised deep learning☆175Oct 13, 2026Updated 2 weeks ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆24Sep 27, 2026Updated last month
- Ensemble binning strategies for combining the output of multiple binning methods.☆23Mar 11, 2023Updated 3 years ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 4 months ago
- Strain Resolution ON Graphs☆50Jul 18, 2023Updated 3 years ago
- Binning Virus Genomes from Metagenomes☆78Jul 13, 2022Updated 4 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- ☆12Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆221Apr 24, 2026Updated 6 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Sep 8, 2026Updated last month
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆236May 9, 2026Updated 5 months ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 4, 2026Updated last month
- Discovery of conserved gene clusters in multiple genomes☆135Oct 22, 2026Updated last week
- 🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit☆24Jun 25, 2026Updated 4 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆78Aug 13, 2026Updated 2 months ago
- Set of utilities on sequences and BAM files☆28Oct 27, 2021Updated 5 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆56Jul 3, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Strain resolver for metagenomics☆81Aug 2, 2024Updated 2 years ago
- Metagenomic Binning Algorithm☆56Oct 22, 2026Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆283Mar 20, 2025Updated last year
- Virus Identification By iteRative ANnoTation☆209Apr 15, 2024Updated 2 years ago
- CAMISIM: Simulating metagenomes and microbial communities☆234Jul 16, 2026Updated 3 months ago
- Build a partitioned pangenome graph from microbial genomes☆312Oct 21, 2026Updated last week
- Phage-Host Interaction Search Tool☆33Sep 10, 2026Updated last month
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rapid comparison and dereplication of genomes☆360Oct 9, 2026Updated 2 weeks ago
- Read alignment statistics for metagenomics☆411Updated this week
- More scalable dereplication for metagenome assembled genomes☆91Updated this week
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- [AAAI'22] RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning☆25Jan 26, 2024Updated 2 years ago
- sensitive and precise assembly of short sequencing reads☆171Oct 11, 2024Updated 2 years ago
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆50Jul 12, 2026Updated 3 months ago