✨🧬 Refined binning of metagenomic contigs using assembly graphs
☆97Mar 6, 2025Updated 11 months ago
Alternatives and similar repositories for GraphBin
Users that are interested in GraphBin are comparing it to the libraries listed below
Sorting:
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 4 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.☆32May 30, 2023Updated 2 years ago
- Reorients assembled microbial sequences☆133Aug 21, 2025Updated 6 months ago
- Variational autoencoder for metagenomic binning☆317Updated this week
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆21Dec 9, 2025Updated 2 months ago
- Strain Resolution ON Graphs☆50Jul 18, 2023Updated 2 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆155Feb 19, 2026Updated last week
- Virus Identification By iteRative ANnoTation☆186Apr 15, 2024Updated last year
- More scalable dereplication for metagenome assembled genomes☆77Dec 17, 2025Updated 2 months ago
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆19Jan 22, 2026Updated last month
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 5 months ago
- Build a partitioned pangenome graph from microbial genomes☆294Updated this week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 5 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆203Feb 16, 2026Updated last week
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆207Sep 22, 2023Updated 2 years ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated last week
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆45Nov 5, 2025Updated 3 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆42Sep 3, 2024Updated last year
- Discovery of conserved gene clusters in multiple genomes☆124Jan 16, 2026Updated last month
- Graph-based assembly phasing☆91Nov 25, 2025Updated 3 months ago
- alignment to variation graph inducer☆157Jan 20, 2026Updated last month
- Assessing the quality of metagenome-derived genome bins using machine learning☆251Mar 20, 2025Updated 11 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 6 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆147Updated this week
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- ☆23Sep 9, 2025Updated 5 months ago
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Jul 10, 2018Updated 7 years ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated last year
- [AAAI'22] RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning☆25Jan 26, 2024Updated 2 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆103Feb 9, 2026Updated 2 weeks ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- sensitive and precise assembly of short sequencing reads☆162Oct 11, 2024Updated last year
- A tool for removing redundant genomes from a set of assemblies☆78Sep 10, 2025Updated 5 months ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆184Sep 19, 2024Updated last year
- Read alignment statistics for metagenomics☆388Jan 16, 2026Updated last month
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year