metagentools / GraphBinLinks
β¨π§¬ Refined binning of metagenomic contigs using assembly graphs
β95Updated 9 months ago
Alternatives and similar repositories for GraphBin
Users that are interested in GraphBin are comparing it to the libraries listed below
Sorting:
- π¦π§¬ Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphsβ67Updated last year
- β―οΈπ§¬ Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphsβ37Updated last month
- More scalable dereplication for metagenome assembled genomesβ75Updated this week
- Graph-based assembly phasingβ90Updated 3 weeks ago
- Scalable creating/updating of metagenome profiling databasesβ62Updated 5 months ago
- Bifrost graph gene caller.β96Updated 2 months ago
- Strain Resolution ON Graphsβ49Updated 2 years ago
- Python tool to reduce size and redundancy of phylogenetic datasetsβ48Updated 2 weeks ago
- Rapid discovery of novel prophages using biological feature engineering and machine learningβ36Updated last year
- Efficient phylogenetic tree inference for massive taxonomic datasetsβ135Updated 8 months ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseβ¦β103Updated last month
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencingβ51Updated 2 weeks ago
- AMBER: Assessment of Metagenome BinnERsβ32Updated 11 months ago
- π«§π§¬ From fragmented assemblies to high-quality bacteriophage genomesβ81Updated 2 weeks ago
- Predict prokaryotic host for phage metagenomic sequencesβ52Updated last year
- viralVerify: viral contig verification toolβ72Updated 4 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomesβ95Updated 6 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiersβ52Updated last month
- Assembling the cause of phenotypes and genotypes from NGS dataβ29Updated 5 years ago
- A tool for removing redundant genomes from a set of assembliesβ77Updated 3 months ago
- Microbiome classification pipelineβ65Updated 7 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolatesβ81Updated last week
- β16Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.β59Updated 2 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignmentsβ76Updated 2 years ago
- PHANOTATE: a gene caller for phages.β79Updated last year
- Improvement of metagenome-assembled genomesβ54Updated 5 years ago
- a collection of scripts for organising bacterial genomes by speciesβ81Updated 3 years ago
- Recombination-free treesβ62Updated 3 months ago
- A scalable bacterial genome assembly, annotation and analysis pipelineβ75Updated 2 years ago