✨🧬 Refined binning of metagenomic contigs using assembly graphs
☆98Mar 6, 2025Updated last year
Alternatives and similar repositories for GraphBin
Users that are interested in GraphBin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 8 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Jun 15, 2026Updated 2 weeks ago
- LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.☆33Apr 25, 2026Updated 2 months ago
- Variational autoencoder for metagenomic binning☆328Apr 27, 2026Updated 2 months ago
- Reorients assembled microbial sequences☆140Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Strain Resolution ON Graphs☆51Jul 18, 2023Updated 2 years ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- SemiBin: metagenomics binning with self-supervised deep learning☆164Jun 7, 2026Updated 3 weeks ago
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆46Jun 14, 2026Updated 2 weeks ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆22Jun 9, 2026Updated 3 weeks ago
- Virus Identification By iteRative ANnoTation☆197Apr 15, 2024Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆268Mar 20, 2025Updated last year
- More scalable dereplication for metagenome assembled genomes☆84Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆60May 24, 2026Updated last month
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆220May 9, 2026Updated last month
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆216Apr 24, 2026Updated 2 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 5 months ago
- A genome binning method for contig binning, based on semi-supervised spectral clustering method.☆12Nov 21, 2020Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆37Apr 23, 2025Updated last year
- Discovery of conserved gene clusters in multiple genomes☆133Jan 16, 2026Updated 5 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆152Updated this week
- Build a partitioned pangenome graph from microbial genomes☆303Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 9 months ago
- MAGScoT - a MAG scoring and refinement tool☆46Apr 8, 2026Updated 2 months ago
- 🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit☆24Updated this week
- Graph-based assembly phasing☆97Nov 25, 2025Updated 7 months ago
- alignment to variation graph inducer☆161Jun 17, 2026Updated last week
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated 4 months ago
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆120Jan 29, 2026Updated 5 months ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆75Feb 19, 2019Updated 7 years ago
- Read alignment statistics for metagenomics☆399Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆44Sep 3, 2024Updated last year
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 10 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆56May 17, 2022Updated 4 years ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆92May 11, 2026Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆67Apr 10, 2025Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆333Jun 3, 2026Updated 3 weeks ago
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Jul 10, 2018Updated 7 years ago