CAMI-challenge / AMBERLinks
AMBER: Assessment of Metagenome BinnERs
☆31Updated 6 months ago
Alternatives and similar repositories for AMBER
Users that are interested in AMBER are comparing it to the libraries listed below
Sorting:
- Strain Resolution ON Graphs☆48Updated 2 years ago
- Assessing and Improving the quality of metagenomic assemblies☆29Updated 3 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated 11 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- Scalable creating/updating of metagenome profiling databases☆61Updated last month
- ☆16Updated last year
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆63Updated 10 months ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated last month
- Microbiome classification pipeline☆66Updated 2 months ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 10 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 7 months ago
- A toolkit for prokaryotic comparative genomics☆50Updated 6 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 8 months ago
- Automatic eukaryotic taxonomic classification☆29Updated 3 months ago
- Bacterial Annotation by Learned Representation of Genes☆57Updated 4 years ago
- ☆46Updated 2 years ago
- ☆39Updated last month
- A package to annotate protein sequences☆60Updated 5 months ago
- map Illumina metagenomes to genomes!☆39Updated last month
- Graph-based assembly phasing☆85Updated 3 months ago
- Discover and annotate the virome☆45Updated 3 weeks ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆61Updated last week
- More scalable dereplication for metagenome assembled genomes☆63Updated last week
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- Deep learning for Metagenome Assembly Error Detection☆26Updated 4 years ago
- Influenza genome analysis Nextflow workflow☆28Updated last week
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago