CAMI-challenge / AMBERLinks
AMBER: Assessment of Metagenome BinnERs
☆33Updated last month
Alternatives and similar repositories for AMBER
Users that are interested in AMBER are comparing it to the libraries listed below
Sorting:
- Strain Resolution ON Graphs☆50Updated 2 years ago
- Assessing and Improving the quality of metagenomic assemblies☆31Updated 3 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 7 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆68Updated last year
- Automatic eukaryotic taxonomic classification☆29Updated 9 months ago
- ☆45Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆54Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆43Updated 5 months ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Updated 5 months ago
- ☆16Updated last year
- Microbiome classification pipeline☆65Updated 8 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆25Updated 6 months ago
- More scalable dereplication for metagenome assembled genomes☆76Updated last month
- MAG Circularization Method☆32Updated 3 months ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆30Updated 3 weeks ago
- Prophage Activity Estimator☆31Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆25Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- viralVerify: viral contig verification tool☆74Updated 4 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Updated 2 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆97Updated 8 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated this week