CAMI-challenge / AMBER
AMBER: Assessment of Metagenome BinnERs
☆30Updated last month
Alternatives and similar repositories for AMBER:
Users that are interested in AMBER are comparing it to the libraries listed below
- Strain Resolution ON Graphs☆47Updated last year
- Assessing and Improving the quality of metagenomic assemblies☆28Updated 3 years ago
- Improvement of metagenome-assembled genomes☆51Updated 4 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆53Updated last week
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 4 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆62Updated 4 months ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 4 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆60Updated 2 years ago
- Graph-based assembly phasing☆73Updated 3 months ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆18Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 10 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆40Updated last year
- A toolkit for prokaryotic comparative genomics☆41Updated 3 weeks ago
- Linking MAGs with 16S rRNA marker genes☆24Updated 2 weeks ago
- Gene-flank analysis tool☆27Updated 2 months ago
- Estimate metagenomic coverage and sequence diversity☆48Updated 6 months ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 5 months ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆11Updated last year
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆29Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 4 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 2 months ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆48Updated 2 years ago
- ☆16Updated 11 months ago
- Scalable creating/updating of metagenome profiling databases☆60Updated 2 years ago
- Prophage Activity Estimator☆26Updated 8 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆32Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated 3 weeks ago
- ☆26Updated 10 months ago
- ☆33Updated last week