CAMI-challenge / AMBERLinks
AMBER: Assessment of Metagenome BinnERs
☆32Updated 2 weeks ago
Alternatives and similar repositories for AMBER
Users that are interested in AMBER are comparing it to the libraries listed below
Sorting:
- Strain Resolution ON Graphs☆50Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year
- Assessing and Improving the quality of metagenomic assemblies☆31Updated 3 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆43Updated 5 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆68Updated last year
- Scalable creating/updating of metagenome profiling databases☆63Updated 6 months ago
- ☆42Updated 7 months ago
- Microbiome classification pipeline☆65Updated 8 months ago
- More scalable dereplication for metagenome assembled genomes☆75Updated last month
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated 2 months ago
- A package to annotate protein sequences☆60Updated 10 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- Discover and annotate the virome☆58Updated 3 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- Detection of incorrectly labeled sequences across kingdoms☆88Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- ☆16Updated last year
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- Predict prokaryotic host for phage metagenomic sequences☆53Updated last year
- ☆41Updated 4 years ago
- ☆45Updated 2 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆95Updated 7 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆25Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 2 weeks ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago