Strain resolver for metagenomics
☆80Aug 2, 2024Updated last year
Alternatives and similar repositories for Lorikeet
Users that are interested in Lorikeet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated 2 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated 2 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆241Oct 12, 2025Updated 5 months ago
- Read alignment statistics for metagenomics☆395Mar 16, 2026Updated last week
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆179Mar 17, 2026Updated last week
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆48Feb 5, 2026Updated last month
- Toolbox for comparative genomics of MAGs☆88Mar 19, 2026Updated last week
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆82Mar 12, 2026Updated 2 weeks ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆72Mar 3, 2026Updated 3 weeks ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 5 months ago
- Graph-based assembly phasing☆91Nov 25, 2025Updated 4 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆298Feb 3, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆184Updated this week
- More scalable dereplication for metagenome assembled genomes☆78Mar 8, 2026Updated 3 weeks ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆104Mar 21, 2026Updated last week
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- Light phylogeny library for Rust☆10Oct 24, 2025Updated 5 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- ☆13Aug 15, 2025Updated 7 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Mar 16, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆16May 22, 2023Updated 2 years ago
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 7 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆212Mar 3, 2026Updated 3 weeks ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Sep 23, 2025Updated 6 months ago
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆168Mar 12, 2026Updated 2 weeks ago
- A genomic minhashing implementation in Rust☆103Jun 17, 2025Updated 9 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- Rapid determination of appropriate reference genomes.☆100Jan 22, 2025Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆613Feb 18, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- TAXnomic Profile Aggregation and STAndardisation☆42Nov 18, 2025Updated 4 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- ✨🧬 Refined binning of metagenomic contigs using assembly graphs☆97Mar 6, 2025Updated last year
- Strain Resolution ON Graphs☆50Jul 18, 2023Updated 2 years ago
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆45Nov 5, 2025Updated 4 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆325Mar 18, 2026Updated last week