rhysnewell / LorikeetLinks
Strain resolver for metagenomics
☆75Updated 10 months ago
Alternatives and similar repositories for Lorikeet
Users that are interested in Lorikeet are comparing it to the libraries listed below
Sorting:
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆54Updated 2 months ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Recombination-free trees☆58Updated 3 months ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- ☆54Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆69Updated this week
- Bifrost graph gene caller.☆95Updated 9 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Split k-mer analysis – version 2☆87Updated 4 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 4 months ago
- IslandPath standalone software☆32Updated last year
- Precise host read removal☆101Updated last week
- Estimate metagenomic coverage and sequence diversity☆54Updated 10 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆48Updated 2 weeks ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆42Updated 2 weeks ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆63Updated 9 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆85Updated last month
- Scalable creating/updating of metagenome profiling databases☆61Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 4 months ago
- A listing of software, tools and databases useful for virome analysis☆36Updated this week