rhysnewell / Lorikeet
Strain resolver for metagenomics
☆68Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for Lorikeet
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Split k-mer analysis – version 2☆70Updated 3 weeks ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated last year
- Recombination-free trees☆56Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆39Updated 3 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 weeks ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Split Kmer Analysis☆63Updated 2 years ago
- Bifrost graph gene caller.☆88Updated 2 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- PHANOTATE: a tool to annotate phage genomes.☆69Updated last month
- A tool for removing redundant genomes from a set of assemblies☆68Updated last year
- IslandPath standalone software☆31Updated last year
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Precise host read removal☆78Updated last week
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆51Updated this week
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆32Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆52Updated 2 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆51Updated 6 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆71Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 3 weeks ago
- Binning Virus Genomes from Metagenomes☆58Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆42Updated 4 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- Bacterial GWAS analysis☆32Updated last month
- alignment-free coverage calculation for metagenomic binning >100 times faster☆38Updated this week
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 7 months ago
- Estimate metagenomic coverage and sequence diversity☆46Updated 3 months ago
- Gene-flank analysis tool☆26Updated 6 months ago