Strain resolver for metagenomics
☆81Aug 2, 2024Updated last year
Alternatives and similar repositories for Lorikeet
Users that are interested in Lorikeet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metagenomic Binning Algorithm☆54Jan 16, 2026Updated 5 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆109Jul 1, 2026Updated last week
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆256May 13, 2026Updated last month
- Read alignment statistics for metagenomics☆400Updated this week
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Jun 15, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 3 months ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆51May 5, 2026Updated 2 months ago
- Toolbox for comparative genomics of MAGs☆91Apr 28, 2026Updated 2 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆93May 11, 2026Updated last month
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆77Jun 28, 2026Updated last week
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 8 months ago
- Graph-based assembly phasing☆97Nov 25, 2025Updated 7 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆269Mar 20, 2025Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆314Feb 3, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- More scalable dereplication for metagenome assembled genomes☆85Updated this week
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆191Updated this week
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆106Jun 16, 2026Updated 3 weeks ago
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- Light phylogeny library for Rust☆11Oct 24, 2025Updated 8 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jun 24, 2026Updated 2 weeks ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- ☆13Aug 15, 2025Updated 10 months ago
- ☆17May 22, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Jun 29, 2026Updated last week
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆30Jun 9, 2026Updated last month
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆221May 9, 2026Updated last month
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Sep 23, 2025Updated 9 months ago
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆171Updated this week
- A genomic minhashing implementation in Rust☆103Jun 23, 2026Updated 2 weeks ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Jun 30, 2026Updated last week
- Rapid determination of appropriate reference genomes.☆102Jan 22, 2025Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆661May 15, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 2 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- ✨🧬 Refined binning of metagenomic contigs using assembly graphs☆98Mar 6, 2025Updated last year
- Strain Resolution ON Graphs☆51Jul 18, 2023Updated 2 years ago
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆46Updated this week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆334Jun 3, 2026Updated last month