rhysnewell / LorikeetLinks
Strain resolver for metagenomics
☆78Updated last year
Alternatives and similar repositories for Lorikeet
Users that are interested in Lorikeet are comparing it to the libraries listed below
Sorting:
- More scalable dereplication for metagenome assembled genomes☆68Updated this week
- A tool for removing redundant genomes from a set of assemblies☆76Updated last week
- Split k-mer analysis – version 2☆92Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated 2 weeks ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆46Updated this week
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Recombination-free trees☆60Updated 3 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated last month
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆76Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆60Updated 5 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆62Updated this week
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆89Updated 3 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆94Updated this week
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 4 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 6 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 10 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆34Updated last week
- alignment-free coverage calculation for metagenomic binning >100 times faster☆46Updated 6 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆37Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 5 months ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆39Updated last week