pirovc / genome_updaterLinks
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy
☆160Updated 9 months ago
Alternatives and similar repositories for genome_updater
Users that are interested in genome_updater are comparing it to the libraries listed below
Sorting:
- ☆131Updated last year
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆194Updated last month
- Catalog of genomic indexes freely available from public clouds☆64Updated last month
- Download files from NCBI Entrez by accession☆129Updated last year
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆143Updated last month
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 4 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 6 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆252Updated 3 months ago
- Find clustered hits from a BLAST search☆121Updated 10 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆158Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆221Updated last month
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆156Updated 3 months ago
- a tool for inferring species tree from sequencing reads☆152Updated last week
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated last week
- Antibiotic resistance prediction in minutes☆112Updated 10 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆97Updated 2 years ago
- Bioinformatics Tools☆90Updated last week
- Bioinformatics tool for Locus Visualisation☆124Updated 4 months ago
- Processing pipeline for pan-genome visulization and exploration☆140Updated 2 years ago
- The ARTIC fieldbioinformatics pipeline☆125Updated 3 weeks ago
- DDBJ Fast Annotation and Submission Tool☆83Updated last month
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆185Updated 2 weeks ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆123Updated last year
- Create a tree using Mash distances☆171Updated last year
- WtP: Phage identification via nextflow and docker or singularity☆105Updated 2 weeks ago
- ☆129Updated last week
- snipit: summarise snps relative to your reference sequence☆162Updated 2 weeks ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆171Updated last month
- Convert various sequence formats to FASTA☆138Updated 3 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆165Updated last week