fast, multithreaded sourmash operations: search, compare, and gather.
☆25Mar 16, 2026Updated last week
Alternatives and similar repositories for sourmash_plugin_branchwater
Users that are interested in sourmash_plugin_branchwater are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Library of sketching functions used by PopPUNK☆31Mar 31, 2025Updated 11 months ago
- K-mer substring space decomposition☆44Sep 1, 2025Updated 6 months ago
- Just another minhash implementation.☆12Mar 12, 2026Updated 2 weeks ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 7 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆34Updated this week
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 2 months ago
- ☆16Jan 21, 2024Updated 2 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆88Jan 25, 2024Updated 2 years ago
- A SIMD-accelerated library to compute random minimizers☆39Mar 1, 2026Updated 3 weeks ago
- Build sourmash databases for genbank.☆11May 4, 2023Updated 2 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 2 months ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆97May 20, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- Searching large collections of sequencing data with genome-scale queries☆17Feb 5, 2026Updated last month
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆49Mar 2, 2026Updated 3 weeks ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- ☆13Dec 3, 2024Updated last year
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated 10 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- Rust bindings to minimap2 library☆109Mar 2, 2026Updated 3 weeks ago
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- Efficient, parallel compression for terabyte-scale data☆61Feb 25, 2026Updated last month
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆53Mar 23, 2026Updated last week
- ☆14Oct 14, 2020Updated 5 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆179Mar 17, 2026Updated last week
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 4 years ago
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- Split Kmer Analysis☆66May 26, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆46Nov 21, 2025Updated 4 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆241Oct 12, 2025Updated 5 months ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated last year
- Development repo for pyani-plus (the next iteration of pyani)☆29Updated this week
- Genome size estimation from long read overlaps☆81Mar 9, 2026Updated 3 weeks ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year