zoubohao / CompleteBinLinks
The binning tool with dynamic contrastive learning and deep language model
☆13Updated last week
Alternatives and similar repositories for CompleteBin
Users that are interested in CompleteBin are comparing it to the libraries listed below
Sorting:
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆20Updated 3 months ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆12Updated 2 years ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Updated last year
- ☆11Updated 3 months ago
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆16Updated last year
- ☆16Updated 3 weeks ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆24Updated this week
- ☆16Updated 2 weeks ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 4 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated last month
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated this week
- Tool for unsupervised contig binning from viral metagenomes☆17Updated 3 years ago
- The viral taxonomic assignment pipeline☆27Updated 6 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- Profiler for metagenomics based on NGLess☆13Updated last year
- MAGScoT - a MAG scoring and refinement tool☆36Updated 10 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated last month
- Virus Identification☆23Updated 3 months ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Updated 3 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated last month
- Repository for general metagenomics Nextflow pipeline☆23Updated this week
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- snakemake-powered cli to download genomes using NCBI datasets☆14Updated 3 weeks ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated last month
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20Updated 3 years ago
- strain-level analysis tools☆39Updated 10 months ago