zoubohao / CompleteBinLinks
The binning tool with dynamic contrastive learning and deep language model
☆13Updated last week
Alternatives and similar repositories for CompleteBin
Users that are interested in CompleteBin are comparing it to the libraries listed below
Sorting:
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆21Updated 3 months ago
- ☆11Updated 3 months ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Updated last year
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆16Updated last year
- Repository for codes, analyses and visualizations for the CAMI II challenges☆11Updated 2 years ago
- ☆16Updated last week
- Tool for unsupervised contig binning from viral metagenomes☆17Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- ☆16Updated last month
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Updated 2 years ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆36Updated 6 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆65Updated last year
- Genomic sequence aligner☆29Updated last week
- Virus Identification☆23Updated 4 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 8 months ago
- snakemake-powered cli to download genomes using NCBI datasets☆14Updated last month
- Repository for general metagenomics Nextflow pipeline☆23Updated last week
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 3 weeks ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆35Updated 5 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆30Updated 2 months ago
- Profiler for metagenomics based on NGLess☆12Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated 2 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆24Updated this week
- The viral taxonomic assignment pipeline☆27Updated 6 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- strain-level analysis tools☆39Updated 11 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆23Updated last month
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 5 months ago