The binning tool with dynamic contrastive learning and deep language model
☆23Nov 14, 2025Updated 5 months ago
Alternatives and similar repositories for CompleteBin
Users that are interested in CompleteBin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Sep 4, 2023Updated 2 years ago
- ☆11Jun 3, 2025Updated 11 months ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Jun 3, 2025Updated 11 months ago
- More scalable dereplication for metagenome assembled genomes☆80Mar 8, 2026Updated last month
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆49Feb 5, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- SemiBin: metagenomics binning with self-supervised deep learning☆161Apr 25, 2026Updated last week
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆52Mar 26, 2026Updated last month
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 7 months ago
- Training scripts for BERTax☆12Jun 12, 2024Updated last year
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆75Mar 3, 2026Updated 2 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆128Apr 19, 2026Updated 2 weeks ago
- A metagenome assembler for the linked-reads with high-barcode specificity☆10Feb 27, 2026Updated 2 months ago
- ☆16Jan 12, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆64Feb 27, 2024Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆44Apr 8, 2026Updated 3 weeks ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆28Apr 14, 2026Updated 3 weeks ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆37Apr 7, 2026Updated 3 weeks ago
- BBTools: Official suite of fast, multithreaded bioinformatics tools for DNA/RNA analysis. BBMap aligner, BBDuk trimmer, BBMerge, and 90+ …☆71Updated this week
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Jan 8, 2024Updated 2 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆52Dec 22, 2024Updated last year
- ☆14Sep 2, 2021Updated 4 years ago
- TransAnnot - a fast transcriptome annotation pipeline☆20Jan 22, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- ☆16Jun 2, 2021Updated 4 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆28Apr 13, 2026Updated 3 weeks ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- ☆25Jun 20, 2023Updated 2 years ago
- AnADAMA2 is the next generation of AnADAMA (Another Automated Data Analysis Management Application). AnADAMA is a tool to capture your wo…☆12Mar 25, 2026Updated last month
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆19Mar 12, 2026Updated last month
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated 3 weeks ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆27Mar 23, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.☆33Updated this week
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 3 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 5 years ago
- Estimate metagenomic coverage and sequence diversity☆60Dec 18, 2025Updated 4 months ago
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆23Nov 25, 2025Updated 5 months ago
- 2017Rcourse☆15Mar 20, 2018Updated 8 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆257Mar 20, 2025Updated last year