Joint structural variant and copy number variant caller for HiFi sequencing data
☆78Nov 4, 2025Updated 8 months ago
Alternatives and similar repositories for sawfish
Users that are interested in sawfish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Complex structural variant visualization for HiFi sequencing data☆49Oct 24, 2025Updated 8 months ago
- HiFi-based caller for highly similar paralogous genes☆70Updated this week
- A battery of methylation tools for PacBio HiFi reads☆52Jun 2, 2026Updated last month
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆86May 27, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆105Jun 25, 2026Updated 2 weeks ago
- bioinformatics toolkit in rust☆107May 14, 2026Updated last month
- Kmer Analysis of Pileups for Genotyping☆40Mar 6, 2026Updated 4 months ago
- A complete diploid human genome☆152Jun 23, 2026Updated 2 weeks ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆26Jun 27, 2026Updated last week
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆49Oct 22, 2024Updated last year
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- expressions on VCFs☆92Mar 17, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Assemblies from HPP Year 1 production☆82May 9, 2023Updated 3 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 6 months ago
- SV detection tool for nanopore sequence reads☆97Mar 25, 2026Updated 3 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆139Jun 10, 2026Updated 3 weeks ago
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- A Rust library and command line tool for working with genomic ranges and their data.☆102May 29, 2024Updated 2 years ago
- Tumor-normal variant calling workflow using HiFi reads☆31Mar 4, 2026Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 10 months ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated 2 months ago
- Evaluating genome assemblies☆122Mar 3, 2026Updated 4 months ago
- ☆20Mar 13, 2026Updated 3 months ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year
- ☆85May 8, 2026Updated 2 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 8 months ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated last year
- A tool for sniffing out the differences in vari-Ants☆42Apr 7, 2026Updated 3 months ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 9 months ago
- Collection of tools for the analysis of CpG data☆112Jul 9, 2025Updated 11 months ago
- ☆32Jun 18, 2026Updated 2 weeks ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year