Joint structural variant and copy number variant caller for HiFi sequencing data
☆82Nov 4, 2025Updated 10 months ago
Alternatives and similar repositories for sawfish
Users that are interested in sawfish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Complex structural variant visualization for HiFi sequencing data☆51Aug 6, 2026Updated last month
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆40Dec 30, 2025Updated 8 months ago
- A battery of methylation tools for PacBio HiFi reads☆57Jul 15, 2026Updated 2 months ago
- HiFi-based caller for highly similar paralogous genes☆76Updated this week
- A tool for sniffing out the differences in vari-Ants☆56Aug 10, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆19Jul 15, 2026Updated 2 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆50Oct 22, 2024Updated last year
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- A phase-aware pharmacogenomic diplotyper for PacBio datasets☆25Jul 30, 2026Updated last month
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated last year
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆111Jun 25, 2026Updated 3 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆23Aug 1, 2024Updated 2 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆88May 27, 2026Updated 4 months ago
- ☆88Aug 18, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Blazingly fast, streaming duplicate detection for NGS data☆21Aug 24, 2026Updated last month
- A complete diploid human genome☆160Aug 10, 2026Updated last month
- Collection of tools for the analysis of CpG data☆114Jul 9, 2025Updated last year
- ☆32Jun 18, 2026Updated 3 months ago
- bioinformatics toolkit in rust☆108Aug 16, 2026Updated last month
- Tandem repeat genotyping and visualization from PacBio HiFi data☆144Jun 10, 2026Updated 3 months ago
- A tool for somatic structural variant calling using long reads☆179Jun 8, 2026Updated 3 months ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated 2 months ago
- gia: Genomic Interval Arithmetic☆69Aug 21, 2024Updated 2 years ago
- Tumor-normal variant calling workflow using HiFi reads☆31Mar 4, 2026Updated 6 months ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆29Aug 12, 2026Updated last month
- ☆31Jul 13, 2026Updated 2 months ago
- ☆27Nov 14, 2025Updated 10 months ago
- An HLA star-calling tool for PacBio HiFi data types☆23Feb 26, 2025Updated last year
- ☆132Updated this week
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆24Sep 9, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Copy number caller for long read data including SNV utilization☆71Mar 31, 2025Updated last year
- ☆18Jan 29, 2025Updated last year
- expressions on VCFs☆93Updated this week
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year
- A multiscale pangenome browser☆36Jul 18, 2026Updated 2 months ago
- an API for intersections of genomic data☆149Sep 17, 2026Updated last week
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago