PacificBiosciences / sawfish
Structural variant discovery and genotyping from mapped PacBio HiFi data
☆36Updated this week
Alternatives and similar repositories for sawfish:
Users that are interested in sawfish are comparing it to the libraries listed below
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆35Updated last week
- De novo tandem repeat calling from PacBio HiFi data☆15Updated 3 months ago
- WDL workflows for variant calling and assembly using ONT☆30Updated 3 weeks ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆39Updated 2 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated last year
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Structural variant (SV) analysis tools☆35Updated 6 months ago
- ☆25Updated 2 months ago
- implicit pangenome graph☆51Updated this week
- SNP-Assisted SV Calling and Phasing Using ONT☆24Updated last year
- Variant annotation and merging pipeline☆31Updated last week
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆30Updated last month
- MethPhaser: methylation-based haplotype phasing of human genomes☆43Updated 6 months ago
- Statistics and analysis for variation graphs☆33Updated last month
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 3 weeks ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated 3 months ago
- ☆35Updated 10 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆32Updated this week
- A battery of methylation tools for PacBio HiFi reads☆29Updated last month
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- Population-wide Deletion Calling☆35Updated 4 months ago
- Copy number caller for long read data including SNV utilization☆55Updated 3 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 3 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- SV genotyping with long reads☆40Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 5 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆24Updated 3 weeks ago