Joint structural variant and copy number variant caller for HiFi sequencing data
☆80Nov 4, 2025Updated 9 months ago
Alternatives and similar repositories for sawfish
Users that are interested in sawfish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Complex structural variant visualization for HiFi sequencing data☆51Aug 6, 2026Updated last week
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 7 months ago
- A battery of methylation tools for PacBio HiFi reads☆54Jul 15, 2026Updated last month
- HiFi-based caller for highly similar paralogous genes☆73Updated this week
- A tool for sniffing out the differences in vari-Ants☆45Aug 10, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆19Jul 15, 2026Updated last month
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆49Oct 22, 2024Updated last year
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- A phase-aware pharmacogenomic diplotyper for PacBio datasets☆24Jul 30, 2026Updated 2 weeks ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 11 months ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆109Jun 25, 2026Updated last month
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated 2 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆87May 27, 2026Updated 2 months ago
- ☆87Aug 11, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Blazingly fast, streaming duplicate detection for NGS data☆18Aug 9, 2026Updated last week
- A complete diploid human genome☆156Aug 10, 2026Updated last week
- Collection of tools for the analysis of CpG data☆114Jul 9, 2025Updated last year
- ☆32Jun 18, 2026Updated 2 months ago
- bioinformatics toolkit in rust☆107Updated this week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆143Jun 10, 2026Updated 2 months ago
- A tool for somatic structural variant calling using long reads☆177Jun 8, 2026Updated 2 months ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Kmer Analysis of Pileups for Genotyping☆40Jul 16, 2026Updated last month
- Tumor-normal variant calling workflow using HiFi reads☆31Mar 4, 2026Updated 5 months ago
- gia: Genomic Interval Arithmetic☆67Aug 21, 2024Updated last year
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆28Updated this week
- ☆23Jul 13, 2026Updated last month
- ☆27Nov 14, 2025Updated 9 months ago
- An HLA star-calling tool for PacBio HiFi data types☆23Feb 26, 2025Updated last year
- ☆130Jul 22, 2026Updated 3 weeks ago
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆23Jul 1, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Copy number caller for long read data including SNV utilization☆70Mar 31, 2025Updated last year
- ☆18Jan 29, 2025Updated last year
- expressions on VCFs☆93Mar 17, 2026Updated 5 months ago
- fastVEP: High-performance Variant Effect Predictor in Rust☆122Updated this week
- Simple pileup-based variant caller☆96Apr 25, 2025Updated last year
- A multiscale pangenome browser☆30Jul 18, 2026Updated last month
- an API for intersections of genomic data☆149Mar 12, 2026Updated 5 months ago