Alternatives and similar repositories for granges

Users that are interested in granges are comparing it to the libraries listed below

• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆63Updated 2 months ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated this week
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆100Updated 2 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated this week
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆111Updated last week
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆89Updated last month
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated 3 months ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆137Updated last week
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆99Updated 3 months ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆43Updated last month
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆97Updated last year
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆45Updated 4 months ago
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆25Updated last month
• refresh-bio / SPLASH
  ☆80Updated this week
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆61Updated this week
• biodatageeks / polars-bio
  Blazing-Fast Bioinformatic Operations on Python DataFrames
  ☆69Updated this week
• OceanGenomics / mudskipper
  A tool for projecting genomic alignments to transcriptomic coordinates
  ☆36Updated last year
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated 9 months ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆62Updated 3 months ago
• refgenie / refgenie
  Reference genome resource manager
  ☆75Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated 11 months ago
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆38Updated last year
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆43Updated 4 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆27Updated 2 months ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆63Updated this week
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆90Updated 2 months ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆34Updated last week
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆28Updated 3 months ago
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆80Updated this week
• biocore-ntnu / epic2
  Ultraperformant reimplementation of SICER
  ☆57Updated 3 years ago