vsbuffalo / grangesLinks
A Rust library and command line tool for working with genomic ranges and their data.
☆100Updated last year
Alternatives and similar repositories for granges
Users that are interested in granges are comparing it to the libraries listed below
Sorting:
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- bedtools-like functionality for interval sets in rust☆54Updated 2 months ago
- an API for intersections of genomic data☆74Updated this week
- A high-performance BigWig and BigBed library in Rust☆104Updated last week
- An efficient CLI to extract sequences from the SRA☆113Updated 3 months ago
- expressions on VCFs☆86Updated 6 months ago
- long read RNA-seq quantification☆91Updated last week
- Per-base per-nucleotide depth analysis☆142Updated last month
- Grep for FASTQ files☆98Updated 6 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated last week
- Fast sequencing data quality metrics☆28Updated last month
- BigWig and BAM utilities☆98Updated last year
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆98Updated this week
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated last month
- vembrane filters VCF records using python expressions☆65Updated last month
- gia: Genomic Interval Arithmetic☆64Updated last year
- Single-cell analysis methods in Rust☆27Updated 4 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated this week
- Reference genome resource manager☆74Updated last year
- Experimental features for Nextflow☆45Updated 2 months ago
- a lexicographically-based GTF/GFF sorter☆35Updated 6 months ago
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- Ultraperformant reimplementation of SICER☆58Updated 4 years ago
- ☆82Updated last month
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆89Updated last week
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 8 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated 3 weeks ago