Alternatives and similar repositories for granges

Users that are interested in granges are comparing it to the libraries listed below

• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated last week
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆54Updated 2 months ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆74Updated this week
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆104Updated last week
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆113Updated 3 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆86Updated 6 months ago
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆91Updated last week
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆142Updated last month
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆98Updated 6 months ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆44Updated last week
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆28Updated last month
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆98Updated last year
• biodatageeks / polars-bio
  Blazing-Fast Bioinformatic Operations on Python DataFrames
  ☆98Updated this week
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆67Updated last month
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆65Updated last month
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆64Updated last year
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆27Updated 4 months ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆36Updated this week
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last year
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆45Updated 2 months ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆35Updated 6 months ago
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆38Updated last year
• biocore-ntnu / epic2
  Ultraperformant reimplementation of SICER
  ☆58Updated 4 years ago
• refresh-bio / SPLASH
  ☆82Updated last month
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated last year
• OceanGenomics / mudskipper
  A tool for projecting genomic alignments to transcriptomic coordinates
  ☆36Updated last year
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆89Updated last week
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated 8 months ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆142Updated 2 months ago
• TrinityCTAT / CTAT-LR-fusion
  fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector
  ☆22Updated 3 weeks ago