Alternatives and similar repositories for granges

Users that are interested in granges are comparing it to the libraries listed below

• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆65Updated 4 months ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆74Updated last week
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆103Updated 4 months ago
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆90Updated 2 weeks ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆53Updated 2 months ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆113Updated 2 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated 5 months ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆142Updated 2 weeks ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆98Updated 5 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆64Updated last year
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆44Updated 3 months ago
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆27Updated 3 months ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆97Updated last year
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆28Updated last month
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆92Updated last week
• biocore-ntnu / epic2
  Ultraperformant reimplementation of SICER
  ☆57Updated 4 years ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆64Updated last week
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last year
• OceanGenomics / mudskipper
  A tool for projecting genomic alignments to transcriptomic coordinates
  ☆36Updated last year
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆63Updated 5 months ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆36Updated this week
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆38Updated last year
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆45Updated last month
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆46Updated last week
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆67Updated 3 weeks ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated 11 months ago
• lh3 / ref-gen
  Human reference genome analysis sets
  ☆55Updated 2 years ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆142Updated last month
• mlafave / sam2pairwise
  sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.
  ☆44Updated 10 years ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆36Updated 5 months ago